RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 ZNF623O75123 536 aa21.16■□□□□ 0.98
TRIM28-201ENST00000253024 NR4A1P22736 598 aa21.16■□□□□ 0.98
TRIM28-201ENST00000253024 GSK3BP49841 420 aa21.16■□□□□ 0.98
TRIM28-201ENST00000253024 LIPEQ05469 1076 aa21.16■□□□□ 0.98
TRIM28-201ENST00000253024 KLHDC8BQ8IXV7 354 aa21.16■□□□□ 0.98
TRIM28-201ENST00000253024 DCP1BQ8IZD4 617 aaKnown RBP21.16■□□□□ 0.98
TRIM28-201ENST00000253024 CLHC1Q8NHS4 586 aa21.16■□□□□ 0.98
TRIM28-201ENST00000253024 GABPB2Q8TAK5 448 aaPredicted RBP21.16■□□□□ 0.98
TRIM28-201ENST00000253024 WBP2Q969T9 261 aa21.16■□□□□ 0.98
TRIM28-201ENST00000253024 MTFMTQ96DP5 389 aaKnown RBP21.16■□□□□ 0.98
TRIM28-201ENST00000253024 APOL5Q9BWW9 433 aa21.16■□□□□ 0.98
TRIM28-201ENST00000253024 F5H5T6 163 aa21.16■□□□□ 0.98
TRIM28-201ENST00000253024 ALPIP09923 528 aa21.16■□□□□ 0.98
TRIM28-201ENST00000253024 PSMA4P25789 261 aaKnown RBP21.16■□□□□ 0.98
TRIM28-201ENST00000253024 MC4RP32245 332 aa21.16■□□□□ 0.98
TRIM28-201ENST00000253024 NR1H2P55055 460 aa21.16■□□□□ 0.98
TRIM28-201ENST00000253024 SLC44A4Q53GD3 710 aa21.16■□□□□ 0.98
TRIM28-201ENST00000253024 ANKRD34AQ69YU3 496 aa21.16■□□□□ 0.98
TRIM28-201ENST00000253024 CLDN19Q8N6F1 224 aa21.16■□□□□ 0.98
TRIM28-201ENST00000253024 LINC01599Q8WXQ3 324 aa21.16■□□□□ 0.98
TRIM28-201ENST00000253024 KCTD14Q9BQ13 255 aaPredicted RBP21.16■□□□□ 0.98
TRIM28-201ENST00000253024 SLC2A11Q9BYW1 496 aa21.16■□□□□ 0.98
TRIM28-201ENST00000253024 TAS2R13Q9NYV9 303 aa21.16■□□□□ 0.98
TRIM28-201ENST00000253024 HSFX1Q9UBD0 423 aa21.16■□□□□ 0.98
TRIM28-201ENST00000253024 PCDHB8Q9UN66 801 aa21.16■□□□□ 0.98
TRIM28-201ENST00000253024 GIPC1O14908 333 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 SYNCRIPO60506 623 aaKnown RBP21.15■□□□□ 0.98
TRIM28-201ENST00000253024 SNX2O60749 519 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 TRMUO75648 421 aaKnown RBP21.15■□□□□ 0.98
TRIM28-201ENST00000253024 FAM163BP0C2L3 166 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 HK3P52790 923 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 KCNK10P57789 538 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 SELPLGQ14242 412 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 RTP2Q5QGT7 225 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 ATXN7L2Q5T6C5 722 aaPredicted RBP21.15■□□□□ 0.98
TRIM28-201ENST00000253024 ANKS6Q68DC2 871 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 MILR1Q7Z6M3 343 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 ABI1Q8IZP0 508 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 BRSK1Q8TDC3 778 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 FBXO44Q9H4M3 255 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 ALG2Q9H553 416 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 ASPDHA6ND91 283 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 SNAP29O95721 258 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 IL12AP29459 219 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 LAPTM5Q13571 262 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 APOFQ13790 326 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 DSC3Q14574 896 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 FUBP1Q96AE4 644 aaKnown RBP21.15■□□□□ 0.98
TRIM28-201ENST00000253024 L3HYPDHQ96EM0 354 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 ZFRQ96KR1 1074 aaKnown RBP21.15■□□□□ 0.98
TRIM28-201ENST00000253024 TCF12Q99081 682 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 TBCDQ9BTW9 1192 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 OSBPL11Q9BXB4 747 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 NAA50Q9GZZ1 169 aaKnown RBP21.15■□□□□ 0.98
TRIM28-201ENST00000253024 PRM3Q9NNZ6 103 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 TLR9Q9NR96 1032 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 KRT87PA6NCN2 255 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 AP1G1O43747 822 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 PRKAR2AP13861 404 aaKnown RBP21.15■□□□□ 0.98
TRIM28-201ENST00000253024 POLD2P49005 469 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 TBPL2Q6SJ96 375 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 CARM1Q86X55 608 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 PHYKPLQ8IUZ5 450 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 HSPBAP1Q96EW2 488 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 C1orf74Q96LT6 269 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 DMTF1Q9Y222 760 aa21.15■□□□□ 0.98
TRIM28-201ENST00000253024 C1RP00736 705 aa21.14■□□□□ 0.97
TRIM28-201ENST00000253024 CYBBP04839 570 aa21.14■□□□□ 0.97
TRIM28-201ENST00000253024 TFPTP0C1Z6 253 aa21.14■□□□□ 0.97
TRIM28-201ENST00000253024 CYBAP13498 195 aa21.14■□□□□ 0.97
TRIM28-201ENST00000253024 IL10P22301 178 aa21.14■□□□□ 0.97
TRIM28-201ENST00000253024 EEF1B2P24534 225 aaKnown RBP21.14■□□□□ 0.97
TRIM28-201ENST00000253024 OR4D2P58180 307 aa21.14■□□□□ 0.97
TRIM28-201ENST00000253024 RAD51Q06609 339 aa21.14■□□□□ 0.97
TRIM28-201ENST00000253024 IL10RBQ08334 325 aa21.14■□□□□ 0.97
TRIM28-201ENST00000253024 ERMP1Q7Z2K6 904 aa21.14■□□□□ 0.97
TRIM28-201ENST00000253024 KIAA2013Q8IYS2 634 aa21.14■□□□□ 0.97
TRIM28-201ENST00000253024 STAG3L4Q8TBR4 150 aa21.14■□□□□ 0.97
TRIM28-201ENST00000253024 ADI1Q9BV57 179 aa21.14■□□□□ 0.97
TRIM28-201ENST00000253024 ZFP14Q9HCL3 533 aa21.14■□□□□ 0.97
TRIM28-201ENST00000253024 NMRK2Q9NPI5 230 aa21.14■□□□□ 0.97
TRIM28-201ENST00000253024 PLK2Q9NYY3 685 aa21.14■□□□□ 0.97
TRIM28-201ENST00000253024 PTTG2Q9NZH5 202 aa21.14■□□□□ 0.97
TRIM28-201ENST00000253024 FAM8A1Q9UBU6 413 aa21.14■□□□□ 0.97
TRIM28-201ENST00000253024 CCDC154A6NI56 674 aa21.14■□□□□ 0.97
TRIM28-201ENST00000253024 LCP2Q13094 533 aa21.14■□□□□ 0.97
TRIM28-201ENST00000253024 NHSL2Q5HYW2 709 aa21.14■□□□□ 0.97
TRIM28-201ENST00000253024 IL27RAQ6UWB1 636 aa21.14■□□□□ 0.97
TRIM28-201ENST00000253024 HS3ST5Q8IZT8 346 aa21.14■□□□□ 0.97
TRIM28-201ENST00000253024 SGCDQ92629 289 aa21.14■□□□□ 0.97
TRIM28-201ENST00000253024 TLR8Q9NR97 1041 aaKnown RBP21.14■□□□□ 0.97
TRIM28-201ENST00000253024 H3BNH8 94 aa21.13■□□□□ 0.97
TRIM28-201ENST00000253024 PRAMEF11O60813 436 aa21.13■□□□□ 0.97
TRIM28-201ENST00000253024 CDK4P11802 303 aa21.13■□□□□ 0.97
TRIM28-201ENST00000253024 FASP25445 335 aa21.13■□□□□ 0.97
TRIM28-201ENST00000253024 NFKBIAP25963 317 aa21.13■□□□□ 0.97
TRIM28-201ENST00000253024 GNA12Q03113 381 aa21.13■□□□□ 0.97
TRIM28-201ENST00000253024 MFSD14CQ5VZR4 134 aa21.13■□□□□ 0.97
TRIM28-201ENST00000253024 IFNL1Q8IU54 200 aa21.13■□□□□ 0.97
TRIM28-201ENST00000253024 SQORQ9Y6N5 450 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms