RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 XPR1Q9UBH6 696 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 ANGPT4Q9Y264 503 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 ZNF217O75362 1048 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 CD48P09326 243 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 ITGA2P17301 1181 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 PSMC3P17980 439 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 PGS1Q32NB8 556 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 ZNF549Q6P9A3 640 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 CES3Q6UWW8 571 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 GLB1L3Q8NCI6 653 aaPredicted RBP13.57□□□□□ -0.24
LDLR-201ENST00000252444 BTBD10Q9BSF8 475 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 WBP1LQ9NX94 342 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 SCN3BQ9NY72 215 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 SALL4Q9UJQ4 1053 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 PADI4Q9UM07 663 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 MRASO14807 208 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 SYN1P17600 705 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 LCP2Q13094 533 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 ZNF805Q5CZA5 627 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 TXNDC8Q6A555 127 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 CDK20Q8IZL9 346 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 TRAM1L1Q8N609 369 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 SIPA1Q96FS4 1042 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 POLR3BQ9NW08 1133 aaPredicted RBP13.57□□□□□ -0.24
LDLR-201ENST00000252444 DRGXA6NNA5 263 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 GPR89AB7ZAQ6 455 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 FCHO1O14526 889 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 KMOO15229 486 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 AKAP10O43572 662 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 VEGFDO43915 354 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 GPR89BP0CG08 455 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 EEF1DP29692 281 aaKnown RBP13.57□□□□□ -0.24
LDLR-201ENST00000252444 GYS2P54840 703 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 XKR6Q5GH73 641 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 GKN2Q86XP6 184 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 SLC43A3Q8NBI5 491 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 KCTD4Q8WVF5 259 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 TGM5O43548 720 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 RTP2Q5QGT7 225 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 GJD3Q8N144 294 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 CYP4Z2PQ8N1L4 340 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 KCNV2Q8TDN2 545 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 IMP4Q96G21 291 aaKnown RBP13.56□□□□□ -0.24
LDLR-201ENST00000252444 HOPXQ9BPY8 73 aaPredicted RBP13.56□□□□□ -0.24
LDLR-201ENST00000252444 CLDN9O95484 217 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 C2P06681 752 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 PIM1P11309 404 aaPredicted RBP13.56□□□□□ -0.24
LDLR-201ENST00000252444 ACTN3Q08043 901 aaPredicted RBP13.56□□□□□ -0.24
LDLR-201ENST00000252444 LRRTM4Q86VH4 590 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 PQLC3Q8N755 202 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 EFCAB11Q9BUY7 163 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 BTBD1Q9H0C5 482 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 DCLRE1BQ9H816 532 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 MKS1Q9NXB0 559 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 ACSL5Q9ULC5 683 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 STC2O76061 302 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 HPGDP15428 266 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 HNF4AP41235 474 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 RAD23AP54725 363 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 BTKQ06187 659 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 FNBP1LQ5T0N5 605 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 MIPOL1Q8TD10 442 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 RNF145Q96MT1 663 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 IL12RB2Q99665 862 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 SHCBP1LQ9BZQ2 653 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 IL1RAPL1Q9NZN1 696 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 H2AFY2Q9P0M6 372 aaPredicted RBP13.56□□□□□ -0.24
LDLR-201ENST00000252444 COPG2Q9UBF2 871 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 AURKCQ9UQB9 309 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 MYO1CO00159 1063 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 PGLSO95336 258 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 ANXA6P08133 673 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 JAK1P23458 1154 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 EEF1B2P24534 225 aaKnown RBP13.56□□□□□ -0.24
LDLR-201ENST00000252444 VARSP26640 1264 aaKnown RBP13.56□□□□□ -0.24
LDLR-201ENST00000252444 DUSP3P51452 185 aaPredicted RBP13.56□□□□□ -0.24
LDLR-201ENST00000252444 TRIM68Q6AZZ1 485 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 RD3Q7Z3Z2 195 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 TLCD1Q96CP7 247 aa13.56□□□□□ -0.24
LDLR-201ENST00000252444 GPN3Q9UHW5 284 aaPredicted RBP13.56□□□□□ -0.24
LDLR-201ENST00000252444 VHLP40337 213 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 KLF1Q13351 362 aaPredicted RBP13.55□□□□□ -0.24
LDLR-201ENST00000252444 USP39Q53GS9 565 aaKnown RBP13.55□□□□□ -0.24
LDLR-201ENST00000252444 SLC36A4Q6YBV0 504 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 FAM92BQ6ZTR7 304 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 PROSER1Q86XN7 944 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 MRPL43Q8N983 215 aaKnown RBP13.55□□□□□ -0.24
LDLR-201ENST00000252444 GKN1Q9NS71 199 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 PCDHGA2Q9Y5H1 932 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 PRR5-ARHGAP8B1AHC4 643 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 ANKRD66B4E2M5 251 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 SNRPB2P08579 225 aaKnown RBP13.55□□□□□ -0.24
LDLR-201ENST00000252444 PDE1CQ14123 709 aaPredicted RBP13.55□□□□□ -0.24
LDLR-201ENST00000252444 METTL2BQ6P1Q9 378 aaKnown RBP13.55□□□□□ -0.24
LDLR-201ENST00000252444 MED27Q6P2C8 311 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 HFE2Q6ZVN8 426 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 AMZ2Q86W34 360 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 HM13Q8TCT9 377 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 MYRFLQ96LU7 910 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 BPIFA1Q9NP55 256 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms