RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 ITGADQ13349 1161 aa12.33□□□□□ -0.44
NUP88-201ENST00000225696 RCAN2Q14206 197 aa12.33□□□□□ -0.44
NUP88-201ENST00000225696 NR1D2Q14995 579 aa12.33□□□□□ -0.44
NUP88-201ENST00000225696 MOGQ16653 247 aa12.33□□□□□ -0.44
NUP88-201ENST00000225696 SETMARQ53H47 684 aaPredicted RBP12.33□□□□□ -0.44
NUP88-201ENST00000225696 SLC2A7Q6PXP3 512 aa12.33□□□□□ -0.44
NUP88-201ENST00000225696 PIWIL3Q7Z3Z3 882 aaKnown RBP12.33□□□□□ -0.44
NUP88-201ENST00000225696 SNX29P2Q8IUI4 249 aa12.33□□□□□ -0.44
NUP88-201ENST00000225696 HS3ST5Q8IZT8 346 aa12.33□□□□□ -0.44
NUP88-201ENST00000225696 FAM86B1Q8N7N1 296 aa12.33□□□□□ -0.44
NUP88-201ENST00000225696 PAPD5Q8NDF8 572 aaKnown RBP12.33□□□□□ -0.44
NUP88-201ENST00000225696 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.33□□□□□ -0.44
NUP88-201ENST00000225696 CDCA5Q96FF9 252 aa12.33□□□□□ -0.44
NUP88-201ENST00000225696 CARS2Q9HA77 564 aaKnown RBP12.33□□□□□ -0.44
NUP88-201ENST00000225696 NMUR1Q9HB89 426 aa12.33□□□□□ -0.44
NUP88-201ENST00000225696 INTS10Q9NVR2 710 aaKnown RBP12.33□□□□□ -0.44
NUP88-201ENST00000225696 OSER1Q9NX31 292 aa12.33□□□□□ -0.44
NUP88-201ENST00000225696 HACD3Q9P035 362 aa12.33□□□□□ -0.44
NUP88-201ENST00000225696 GALPQ9UBC7 116 aa12.33□□□□□ -0.44
NUP88-201ENST00000225696 UXTQ9UBK9 157 aaPredicted RBP12.33□□□□□ -0.44
NUP88-201ENST00000225696 UTS2RQ9UKP6 389 aa12.33□□□□□ -0.44
NUP88-201ENST00000225696 SLC27A5Q9Y2P5 690 aa12.33□□□□□ -0.44
NUP88-201ENST00000225696 F8W810 466 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 CYBBP04839 570 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 HTR1AP08908 422 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 ATXN1LP0C7T5 689 aaKnown RBP12.32□□□□□ -0.44
NUP88-201ENST00000225696 MBL2P11226 248 aaPredicted RBP12.32□□□□□ -0.44
NUP88-201ENST00000225696 BRCC3P46736 316 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 CACNB2Q08289 660 aaPredicted RBP12.32□□□□□ -0.44
NUP88-201ENST00000225696 GRSF1Q12849 480 aaKnown RBP eCLIP12.32□□□□□ -0.44
NUP88-201ENST00000225696 PPP1R8Q12972 351 aaKnown RBP12.32□□□□□ -0.44
NUP88-201ENST00000225696 BFSP2Q13515 415 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 AQP6Q13520 282 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 ALFQ53S48 1182 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 PIK3R6Q5UE93 754 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 ZNF773Q6PK81 442 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 SCD5Q86SK9 330 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 ZNF354CQ86Y25 554 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 RIMKLAQ8IXN7 391 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 GPC2Q8N158 579 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 RTL3Q8N8U3 475 aaKnown RBP12.32□□□□□ -0.44
NUP88-201ENST00000225696 GPRC5AQ8NFJ5 357 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 OR10T2Q8NGX3 314 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 SLC22A17Q8WUG5 538 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 PSMG2Q969U7 264 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 HBEGFQ99075 208 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 TRIM54Q9BYV2 358 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 CATSPERBQ9H7T0 1116 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 AGO3Q9H9G7 860 aaKnown RBP12.32□□□□□ -0.44
NUP88-201ENST00000225696 TRNAU1APQ9NX07 287 aaKnown RBP12.32□□□□□ -0.44
NUP88-201ENST00000225696 PKD2L2Q9NZM6 624 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 CPA4Q9UI42 421 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 CDH9Q9ULB4 789 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 FAM50BQ9Y247 325 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 MED16Q9Y2X0 877 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 PTCH2Q9Y6C5 1203 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 DGKBQ9Y6T7 804 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 CCDC162PA2VCL2 907 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 SOBPA7XYQ1 873 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 CDC7O00311 574 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 XYLBO75191 536 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 SEC14L2O76054 403 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 F2P00734 622 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 IDO1P14902 403 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 ZNF12P17014 697 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 SCNN1GP51170 649 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 MTPNP58546 118 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 PHEXP78562 749 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 SPCS2Q15005 226 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 FSCN1Q16658 493 aaKnown RBP12.32□□□□□ -0.44
NUP88-201ENST00000225696 EGFLAMQ63HQ2 1017 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 GTF2IRD2BQ6EKJ0 949 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 PAQR3Q6TCH7 311 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 R3HCC1LQ7Z5L2 792 aaKnown RBP12.32□□□□□ -0.44
NUP88-201ENST00000225696 SYVN1Q86TM6 617 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 GTF2IRD2Q86UP8 949 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 IGFN1Q86VF2 1251 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 TBC1D21Q8IYX1 336 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 DTWD1Q8N5C7 304 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 GOLM1Q8NBJ4 401 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 BLOC1S5Q8TDH9 187 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 BPIFB1Q8TDL5 484 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 CHPT1Q8WUD6 406 aa12.32□□□□□ -0.44
NUP88-201ENST00000225696 PLXNB2O15031 1838 aa12.31□□□□□ -0.44
NUP88-201ENST00000225696 SUPT3HB4E1H0 165 aa12.31□□□□□ -0.44
NUP88-201ENST00000225696 CD3EAPO15446 510 aaKnown RBP12.31□□□□□ -0.44
NUP88-201ENST00000225696 FGF10O15520 208 aaPredicted RBP12.31□□□□□ -0.44
NUP88-201ENST00000225696 MYL3P08590 195 aa12.31□□□□□ -0.44
NUP88-201ENST00000225696 PRR35P0CG20 571 aa12.31□□□□□ -0.44
NUP88-201ENST00000225696 C7P10643 843 aa12.31□□□□□ -0.44
NUP88-201ENST00000225696 SLC2A3P11169 496 aa12.31□□□□□ -0.44
NUP88-201ENST00000225696 TTKP33981 857 aa12.31□□□□□ -0.44
NUP88-201ENST00000225696 IDUAP35475 653 aa12.31□□□□□ -0.44
NUP88-201ENST00000225696 PLA2G16P53816 162 aa12.31□□□□□ -0.44
NUP88-201ENST00000225696 ARSFP54793 590 aa12.31□□□□□ -0.44
NUP88-201ENST00000225696 KCNK10P57789 538 aa12.31□□□□□ -0.44
NUP88-201ENST00000225696 GSTM4Q03013 218 aa12.31□□□□□ -0.44
NUP88-201ENST00000225696 GALNT3Q14435 633 aa12.31□□□□□ -0.44
NUP88-201ENST00000225696 TSNQ15631 228 aaKnown RBP12.31□□□□□ -0.44
NUP88-201ENST00000225696 IMPG1Q17R60 797 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms