RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 UGT2A1Q9Y4X1 527 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 CASZ1Q86V15 1759 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 KIF20BQ96Q89 1820 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 PITPNM1O00562 1244 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 RFPL1O75677 317 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 CD2P06729 351 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 DLDP09622 509 aaKnown RBP4.65□□□□□ -1.67
SCN1A-220ENST00000641603 HLA-EP13747 358 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 FPR1P21462 350 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 RAB39AQ14964 217 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 SHROOM1Q2M3G4 852 aaPredicted RBP4.65□□□□□ -1.67
SCN1A-220ENST00000641603 MEDAGQ5VYS4 303 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 TCEAL6Q6IPX3 200 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 DEF8Q6ZN54 512 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF598Q86UK7 904 aaKnown RBP4.65□□□□□ -1.67
SCN1A-220ENST00000641603 RIOK2Q9BVS4 552 aaKnown RBP4.65□□□□□ -1.67
SCN1A-220ENST00000641603 SLC17A7Q9P2U7 560 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 ERVW-1Q9UQF0 538 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 E2F8A0AVK6 867 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 IPO13O94829 963 aaKnown RBP4.65□□□□□ -1.67
SCN1A-220ENST00000641603 CPB1P15086 417 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 HTR2BP41595 481 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 POLR2JP52435 117 aaKnown RBP4.65□□□□□ -1.67
SCN1A-220ENST00000641603 PTSQ03393 145 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 PTPN11Q06124 597 aaPredicted RBP4.65□□□□□ -1.67
SCN1A-220ENST00000641603 BTBD8Q5XKL5 378 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 STOML3Q8TAV4 291 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 FAM136AQ96C01 138 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 HEPHQ9BQS7 1158 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 ST6GALNAC4Q9H4F1 302 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 MAGIXQ9H6Y5 334 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 KCNK13Q9HB14 408 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 SNX6Q9UNH7 406 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 RNF6Q9Y252 685 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 TLR6Q9Y2C9 796 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 KRBA1A5PL33 1030 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 WASH4PA8MWX3 477 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 TFEBP19484 476 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 MLLT3P42568 568 aaPredicted RBP4.65□□□□□ -1.67
SCN1A-220ENST00000641603 RAB5CP51148 216 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 SSTP61278 116 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 KCTD2Q14681 263 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 KCNA10Q16322 511 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 ESCO2Q56NI9 601 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 SLC22A10Q63ZE4 541 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 ZDHHC24Q6UX98 284 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 ASB13Q8WXK3 278 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 CELF1Q92879 486 aaKnown RBP4.65□□□□□ -1.67
SCN1A-220ENST00000641603 NSUN4Q96CB9 384 aaKnown RBP4.65□□□□□ -1.67
SCN1A-220ENST00000641603 CRISPLD1Q9H336 500 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 CHST12Q9NRB3 414 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 SIX4Q9UIU6 781 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 SPACA6W5XKT8 324 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 ALKQ9UM73 1620 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 PPEF1O14829 653 aaPredicted RBP4.65□□□□□ -1.67
SCN1A-220ENST00000641603 ENTPD6O75354 484 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 SERPINB7O75635 380 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 USP17L8P0C7I0 530 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 MTHFD1P11586 935 aaKnown RBP4.65□□□□□ -1.67
SCN1A-220ENST00000641603 HGFP14210 728 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 RAB3AP20336 220 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 MAP2K3P46734 347 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 MRPS10P82664 201 aaKnown RBP4.65□□□□□ -1.67
SCN1A-220ENST00000641603 RALGDSQ12967 914 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 EIF4HQ15056 248 aaKnown RBP4.65□□□□□ -1.67
SCN1A-220ENST00000641603 SNAPC1Q16533 368 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 MYLK3Q32MK0 819 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 METTL6Q8TCB7 284 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 HAVCR2Q8TDQ0 301 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 SLC39A13Q96H72 371 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 OR51B5Q9H339 312 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 CHD2O14647 1828 aaKnown RBP4.65□□□□□ -1.67
SCN1A-220ENST00000641603 ZBTB24O43167 697 aaPredicted RBP4.65□□□□□ -1.67
SCN1A-220ENST00000641603 GH1P01241 217 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 CHRNA1P02708 482 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 ITGB6P18564 788 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 PVALBP20472 110 aaPredicted RBP4.65□□□□□ -1.67
SCN1A-220ENST00000641603 BTBD16Q32M84 506 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 KBTBD6Q86V97 674 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 CAND1Q86VP6 1230 aaKnown RBP4.65□□□□□ -1.67
SCN1A-220ENST00000641603 IPMKQ8NFU5 416 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 SLC7A6OSQ96CW6 309 aaPredicted RBP4.65□□□□□ -1.67
SCN1A-220ENST00000641603 RIPOR3Q96MK2 946 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 UCK2Q9BZX2 261 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF436Q9C0F3 470 aaPredicted RBP4.65□□□□□ -1.67
SCN1A-220ENST00000641603 MRM3Q9HC36 420 aaKnown RBP4.65□□□□□ -1.67
SCN1A-220ENST00000641603 ZBTB26Q9HCK0 441 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 AKT3Q9Y243 479 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 CPQQ9Y646 472 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 TECPR2O15040 1411 aa4.65□□□□□ -1.67
SCN1A-220ENST00000641603 DCDC2CA8MYV0 355 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 PRSS44E7EML9 344 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 GCATO75600 419 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 GNPDA1P46926 289 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 POU5F1Q01860 360 aaKnown RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 HMGN3Q15651 99 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 UGT2A3Q6UWM9 527 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 PTCHD4Q6ZW05 846 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 GULP1Q9UBP9 304 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 POLR3HQ9Y535 204 aaPredicted RBP4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms