RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 AGXT2Q9BYV1 514 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 RTN4RQ9BZR6 473 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 BRD8Q9H0E9 1235 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 RAB6CQ9H0N0 254 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 TAOK3Q9H2K8 898 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 SLC32A1Q9H598 525 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 SCPEP1Q9HB40 452 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 PCDH9Q9HC56 1237 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 ENTPD7Q9NQZ7 604 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 CYSLTR2Q9NS75 346 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 SNTG1Q9NSN8 517 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 C20orf141Q9NUB4 165 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 BEX4Q9NWD9 120 aaPredicted RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 MCM9Q9NXL9 1143 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 ANAPC11Q9NYG5 84 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 GGA3Q9NZ52 723 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 KIAA1456Q9P272 454 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 ABI3Q9P2A4 366 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 TMEM181Q9P2C4 612 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 KIF17Q9P2E2 1029 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 IFT80Q9P2H3 777 aaPredicted RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 CTNNAL1Q9UBT7 734 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 BAG5Q9UL15 447 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 RARRES3Q9UL19 164 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 CDC14AQ9UNH5 594 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 FAF1Q9UNN5 650 aaPredicted RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 DHDHQ9UQ10 334 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 CNPY2Q9Y2B0 182 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 EXOGQ9Y2C4 368 aaKnown RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 MRPS28Q9Y2Q9 187 aaKnown RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 RRP7AQ9Y3A4 280 aaKnown RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 NFE2L3Q9Y4A8 694 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 LOXL2Q9Y4K0 774 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 STON1Q9Y6Q2 735 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 DGKBQ9Y6T7 804 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 SCINQ9Y6U3 715 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 MUC5BQ9HC84 5762 aaPredicted RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 PDS5AQ29RF7 1337 aaKnown RBP0.44□□□□□ -2.34
VPS35-212ENST00000640313 KDM3AQ9Y4C1 1321 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 SMCHD1A6NHR9 2005 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 A0A0G2JLW4 131 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 hCG_1642624A0A1W2PR95 340 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 ARHGAP10A1A4S6 786 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 TMEM202A6NGA9 273 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 GAGE10A6NGK3 116 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 PRR32B1ATL7 298 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 TEX22C9J3V5 150 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 EIF3FO00303 357 aaPredicted RBP0.44□□□□□ -2.34
VPS35-212ENST00000640313 IFRD1O00458 451 aaPredicted RBP0.44□□□□□ -2.34
VPS35-212ENST00000640313 NCAM2O15394 837 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 IRAK2O43187 625 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 TGFB1I1O43294 461 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 TSPAN3O60637 253 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 ATP2C2O75185 946 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 TACC1O75410 805 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 WISP2O76076 250 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 CAVIN2O95810 425 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 MT-CYBP00156 380 aaPredicted RBP0.44□□□□□ -2.34
VPS35-212ENST00000640313 F9P00740 461 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 IL1AP01583 271 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 IGHV4-39P01824 125 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 TFP02787 698 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 POLBP06746 335 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 GALTP07902 379 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 HOXB5P09067 269 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 TFPIP10646 304 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 ETFAP13804 333 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 SELLP14151 372 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 SLC2A4P14672 509 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 S1PR1P21453 382 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 GPTP24298 496 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 EPHA8P29322 1005 aaPredicted RBP0.44□□□□□ -2.34
VPS35-212ENST00000640313 CORO1AP31146 461 aaKnown RBP0.44□□□□□ -2.34
VPS35-212ENST00000640313 CDAP32320 146 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 ICAM3P32942 547 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 GGT5P36269 586 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 USP8P40818 1118 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 RGS2P41220 211 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 APOBEC1P41238 236 aaKnown RBP0.44□□□□□ -2.34
VPS35-212ENST00000640313 GPD2P43304 727 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 AARSP49588 968 aaKnown RBP eCLIP0.44□□□□□ -2.34
VPS35-212ENST00000640313 BMXP51813 675 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 LIMK2P53671 638 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 RAD23BP54727 409 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 NR1H2P55055 460 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 HNRNPH2P55795 449 aaKnown RBP0.44□□□□□ -2.34
VPS35-212ENST00000640313 CLDN20P56880 219 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 TAS2R38P59533 333 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 VAMP2P63027 116 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 YWHAZP63104 245 aaKnown RBP0.44□□□□□ -2.34
VPS35-212ENST00000640313 EFNB1P98172 346 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 TLE2Q04725 743 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 UBE3AQ05086 875 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 KHDRBS1Q07666 443 aaKnown RBP eCLIP0.44□□□□□ -2.34
VPS35-212ENST00000640313 SPOCK1Q08629 439 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 GALNT2Q10471 571 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 PPFIA1Q13136 1202 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 TDGQ13569 410 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 SLC12A1Q13621 1099 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 NAA25Q14CX7 972 aa0.44□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms