RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 C12orf43Q96C57 262 aaKnown RBP20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 SUSD3Q96L08 255 aa20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 HIPK3Q9H422 1215 aa20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 SYTL2Q9HCH5 934 aa20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 CATSPERZQ9NTU4 200 aa20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 EBF1Q9UH73 591 aa20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 RIMKLBQ9ULI2 386 aa20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 MYO16Q9Y6X6 1858 aa20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 INPP4BO15327 924 aa20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 MAGEB3O15480 346 aa20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 CLOCKO15516 846 aa20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 CHRNA1P02708 482 aa20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 PRR35P0CG20 571 aa20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 TYMPP19971 482 aa20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 EEF1DP29692 281 aaKnown RBP20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 STT3AP46977 705 aa20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 STC1P52823 247 aa20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 KCNK10P57789 538 aa20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 NAA20P61599 178 aa20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 TUSC3Q13454 348 aa20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 SEMA3AQ14563 771 aa20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 TBC1D21Q8IYX1 336 aa20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 ZNF420Q8TAQ5 688 aaPredicted RBP20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 BLOC1S5Q8TDH9 187 aa20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 CYGBQ8WWM9 190 aa20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 UROC1Q96N76 676 aa20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 SCML2Q9UQR0 700 aa20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 ARL5AQ9Y689 179 aa20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 OAS3Q9Y6K5 1087 aaKnown RBP20.02■□□□□ 0.8
SYNGAP1-227ENST00000638142 TCRBV5S2A0A599 114 aa20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 CRCPO75575 148 aa20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 CYBBP04839 570 aa20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 CAPGP40121 348 aa20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 PBX3P40426 434 aa20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 YBX1P67809 324 aaKnown RBP20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 AASDHQ4L235 1098 aaPredicted RBP20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 ANKS6Q68DC2 871 aa20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 PATL1Q86TB9 770 aaKnown RBP20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 SCN4BQ8IWT1 228 aa20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 FBXO39Q8N4B4 442 aa20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 DHRSXQ8N5I4 330 aa20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 SMYD1Q8NB12 490 aa20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 OR4L1Q8NH43 312 aa20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 BRSK1Q8TDC3 778 aa20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 KCTD14Q9BQ13 255 aaPredicted RBP20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 NPLQ9BXD5 320 aaPredicted RBP20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 NUSAP1Q9BXS6 441 aaKnown RBP20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 DERL2Q9GZP9 239 aa20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 POLR1EQ9GZS1 481 aaKnown RBP20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 MUC3BQ9H195 1237 aa20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 AIG1Q9NVV5 245 aa20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 SMPD3Q9NY59 655 aaPredicted RBP20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 FADS3Q9Y5Q0 445 aa20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 CROCCQ5TZA2 2017 aa20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 SUPT3HB4E1H0 165 aa20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 EI24O14681 340 aa20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 SUPT3HO75486 399 aa20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 EEDO75530 441 aaKnown RBP20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 EPOP01588 193 aa20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 DIO3P55073 304 aa20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 SFSWAPQ12872 951 aaKnown RBP20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 TYSND1Q2T9J0 566 aa20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 EFL1Q7Z2Z2 1120 aaKnown RBP20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 TERB1Q8NA31 727 aa20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 SEMA3CQ99985 751 aa20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 INTS10Q9NVR2 710 aaKnown RBP20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 ANAPC2Q9UJX6 822 aa20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 RNF112Q9ULX5 631 aa20.01■□□□□ 0.79
SYNGAP1-227ENST00000638142 SEC24DO94855 1032 aaPredicted RBP20■□□□□ 0.79
SYNGAP1-227ENST00000638142 ENTPD1P49961 510 aa20■□□□□ 0.79
SYNGAP1-227ENST00000638142 EEFSECP57772 596 aaKnown RBP20■□□□□ 0.79
SYNGAP1-227ENST00000638142 LIPEQ05469 1076 aa20■□□□□ 0.79
SYNGAP1-227ENST00000638142 ATP6V0D2Q8N8Y2 350 aa20■□□□□ 0.79
SYNGAP1-227ENST00000638142 YTHDF1Q9BYJ9 559 aaKnown RBP20■□□□□ 0.79
SYNGAP1-227ENST00000638142 ZNF408Q9H9D4 720 aa20■□□□□ 0.79
SYNGAP1-227ENST00000638142 CXorf21Q9HAI6 301 aa20■□□□□ 0.79
SYNGAP1-227ENST00000638142 RPS17P08708 135 aaKnown RBP20■□□□□ 0.79
SYNGAP1-227ENST00000638142 MTHFD1P11586 935 aaKnown RBP20■□□□□ 0.79
SYNGAP1-227ENST00000638142 ETFBP38117 255 aa20■□□□□ 0.79
SYNGAP1-227ENST00000638142 MAGEA8P43361 318 aa20■□□□□ 0.79
SYNGAP1-227ENST00000638142 CTBSQ01459 385 aa20■□□□□ 0.79
SYNGAP1-227ENST00000638142 YWHAHQ04917 246 aaPredicted RBP20■□□□□ 0.79
SYNGAP1-227ENST00000638142 PARP15Q460N3 678 aa20■□□□□ 0.79
SYNGAP1-227ENST00000638142 IL31Q6EBC2 164 aa20■□□□□ 0.79
SYNGAP1-227ENST00000638142 OR13C4Q8NGS5 318 aa20■□□□□ 0.79
SYNGAP1-227ENST00000638142 DNAJB14Q8TBM8 379 aa20■□□□□ 0.79
SYNGAP1-227ENST00000638142 FBXL20Q96IG2 436 aa20■□□□□ 0.79
SYNGAP1-227ENST00000638142 ZNF599Q96NL3 588 aa20■□□□□ 0.79
SYNGAP1-227ENST00000638142 DOK1Q99704 481 aa20■□□□□ 0.79
SYNGAP1-227ENST00000638142 LEF1Q9UJU2 399 aaPredicted RBP20■□□□□ 0.79
SYNGAP1-227ENST00000638142 PCNTO95613 3336 aa19.99■□□□□ 0.79
SYNGAP1-227ENST00000638142 LCHNA4D1U4 455 aa19.99■□□□□ 0.79
SYNGAP1-227ENST00000638142 SYCE1LA8MT33 242 aa19.99■□□□□ 0.79
SYNGAP1-227ENST00000638142 RAMP2O60895 175 aa19.99■□□□□ 0.79
SYNGAP1-227ENST00000638142 RPS9P46781 194 aaKnown RBP19.99■□□□□ 0.79
SYNGAP1-227ENST00000638142 PTPRCAPQ14761 206 aa19.99■□□□□ 0.79
SYNGAP1-227ENST00000638142 POLD3Q15054 466 aaPredicted RBP19.99■□□□□ 0.79
SYNGAP1-227ENST00000638142 RABL3Q5HYI8 236 aa19.99■□□□□ 0.79
SYNGAP1-227ENST00000638142 SEZ6LQ9BYH1 1024 aa19.99■□□□□ 0.79
SYNGAP1-227ENST00000638142 BRINP2Q9C0B6 783 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms