RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	PIP5KL1	Q5T9C9	394 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	HECTD2	Q5U5R9	776 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	ZNF549	Q6P9A3	640 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	RFLNA	Q6ZTI6	216 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823		Q6ZVL8	140 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	ZNF765	Q7L2R6	523 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	CYP2U1	Q7Z449	544 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	CCDC91	Q7Z6B0	441 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	LCA5	Q86VQ0	697 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	SERPINA9	Q86WD7	417 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	TMPRSS6	Q8IU80	811 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	SYNPO	Q8N3V7	929 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	HDDC3	Q8N4P3	179 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	AADAT	Q8N5Z0	425 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	PNPLA1	Q8N8W4	532 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	ANKRD42	Q8N9B4	389 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	ACVR1C	Q8NER5	493 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	RPLP0P6	Q8NHW5	317 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	ERLEC1	Q96DZ1	483 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	NELL2	Q99435	816 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	AARSD1	Q9BTE6	412 aa	Known RBP	11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	WRAP53	Q9BUR4	548 aa	Known RBP	11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	SPATA16	Q9BXB7	569 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	CAPS2	Q9BXY5	557 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	SLC13A1	Q9BZW2	595 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	IQCG	Q9H095	443 aa	Known RBP	11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	ABCG8	Q9H221	673 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	CCDC68	Q9H2F9	335 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	CAB39L	Q9H9S4	337 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	CD248	Q9HCU0	757 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	PCMTD2	Q9NV79	361 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	INTS9	Q9NV88	658 aa	Known RBP	11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	KCTD5	Q9NXV2	234 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	CRLS1	Q9UJA2	301 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	GRID1	Q9ULK0	1009 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	CA14	Q9ULX7	337 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	MMP17	Q9ULZ9	603 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	NDRG2	Q9UN36	371 aa	Known RBP	11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	FADS3	Q9Y5Q0	445 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823		A0A087X1B8	175 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823		A0A096LPK6	155 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	UBA6	A0AVT1	1052 aa	Predicted RBP	11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	GLRA3	O75311	464 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	ESR1	P03372	595 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	DNTT	P04053	509 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	ZNF7	P17097	686 aa	Predicted RBP	11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	COL9A1	P20849	921 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	SAT1	P21673	171 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	CD9	P21926	228 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	ACRV1	P26436	265 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	FMO4	P31512	558 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	ETV3	P41162	512 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	STARD6	P59095	220 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	CREB5	Q02930	508 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	LRRC32	Q14392	662 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	ZKSCAN8	Q15776	578 aa	Predicted RBP	11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	DBN1	Q16643	649 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	TAF1B	Q53T94	588 aa	Predicted RBP	11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	PPM1J	Q5JR12	505 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	RBM20	Q5T481	1227 aa	Known RBP	11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	HHAT	Q5VTY9	493 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	RAPH1	Q70E73	1250 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	CMC1	Q7Z7K0	106 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	NLRP8	Q86W28	1048 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	CEP97	Q8IW35	865 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	RBFA	Q8N0V3	343 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	ZNF687	Q8N1G0	1237 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	NXPE1	Q8N323	547 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	TRAM1L1	Q8N609	369 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	TCP10L	Q8TDR4	215 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	CXorf40A	Q8TE69	158 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	BIRC8	Q96P09	236 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	ZSCAN5A	Q9BUG6	496 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	MKRN2	Q9H000	416 aa	Known RBP	11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	VPS11	Q9H270	941 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	POPDC3	Q9HBV1	291 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	ARHGEF3	Q9NR81	526 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	ZDHHC3	Q9NYG2	299 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	THEG	Q9P2T0	379 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	ITM2B	Q9Y287	266 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	ACOT9	Q9Y305	439 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	PLLP	Q9Y342	182 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	PCDHB1	Q9Y5F3	818 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	EYS	Q5T1H1	3165 aa		11.69	□□□□□ -0.54
CLN6-223	ENST00000637823	GOLGA8CP	A6NN73	597 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	PRMT5	O14744	637 aa	Predicted RBP	11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	LZTS3	O60299	673 aa	Predicted RBP	11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	MMP20	O60882	483 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	RNASEH2A	O75792	299 aa	Known RBP	11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	CHRNB1	P11230	501 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	PKM	P14618	531 aa	Known RBP	11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	GM2A	P17900	193 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	FDXR	P22570	491 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	RPS3	P23396	243 aa	Known RBP eCLIP	11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	SLC26A3	P40879	764 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	CDKN2D	P55273	166 aa		11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	WDR4	P57081	412 aa	Known RBP	11.68	□□□□□ -0.54
CLN6-223	ENST00000637823	GUCY1A3	Q02108	690 aa		11.68	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms