RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 HID1Q8IV36 788 aa17.97■□□□□ 0.47
CLN3-239ENST00000628023 PHACTR4Q8IZ21 702 aa17.97■□□□□ 0.47
CLN3-239ENST00000628023 GALNT15Q8N3T1 639 aa17.97■□□□□ 0.47
CLN3-239ENST00000628023 TRAM1L1Q8N609 369 aa17.97■□□□□ 0.47
CLN3-239ENST00000628023 OR4K2Q8NGD2 314 aa17.97■□□□□ 0.47
CLN3-239ENST00000628023 BAHD1Q8TBE0 780 aaPredicted RBP17.97■□□□□ 0.47
CLN3-239ENST00000628023 LGR4Q9BXB1 951 aa17.97■□□□□ 0.47
CLN3-239ENST00000628023 TEX101Q9BY14 249 aa17.97■□□□□ 0.47
CLN3-239ENST00000628023 SLC13A1Q9BZW2 595 aa17.97■□□□□ 0.47
CLN3-239ENST00000628023 CCDC86Q9H6F5 360 aaKnown RBP17.97■□□□□ 0.47
CLN3-239ENST00000628023 IL17CQ9P0M4 197 aa17.97■□□□□ 0.47
CLN3-239ENST00000628023 NFKBIL1Q9UBC1 381 aaPredicted RBP17.97■□□□□ 0.47
CLN3-239ENST00000628023 APOBEC3BQ9UH17 382 aaKnown RBP17.97■□□□□ 0.47
CLN3-239ENST00000628023 GLYATL1P3A0A0U1RQE8 302 aa17.96■□□□□ 0.47
CLN3-239ENST00000628023 ASMTLO95671 621 aa17.96■□□□□ 0.47
CLN3-239ENST00000628023 SOD1P00441 154 aa17.96■□□□□ 0.47
CLN3-239ENST00000628023 CSF2P04141 144 aa17.96■□□□□ 0.47
CLN3-239ENST00000628023 ADCY8P40145 1251 aa17.96■□□□□ 0.47
CLN3-239ENST00000628023 GRIA1P42261 906 aa17.96■□□□□ 0.47
CLN3-239ENST00000628023 BLKP51451 505 aa17.96■□□□□ 0.47
CLN3-239ENST00000628023 SRP54P61011 504 aaKnown RBP17.96■□□□□ 0.47
CLN3-239ENST00000628023 TMPRSS15P98073 1019 aa17.96■□□□□ 0.47
CLN3-239ENST00000628023 CDK16Q00536 496 aa17.96■□□□□ 0.47
CLN3-239ENST00000628023 PTK6Q13882 451 aa17.96■□□□□ 0.47
CLN3-239ENST00000628023 PTPRCAPQ14761 206 aa17.96■□□□□ 0.47
CLN3-239ENST00000628023 FAM151BQ6UXP7 276 aa17.96■□□□□ 0.47
CLN3-239ENST00000628023 SYDE1Q6ZW31 735 aaPredicted RBP17.96■□□□□ 0.47
CLN3-239ENST00000628023 TRIM74Q86UV6 250 aa17.96■□□□□ 0.47
CLN3-239ENST00000628023 PROSER1Q86XN7 944 aa17.96■□□□□ 0.47
CLN3-239ENST00000628023 GATAD2AQ86YP4 633 aa17.96■□□□□ 0.47
CLN3-239ENST00000628023 OR56A4Q8NGH8 313 aa17.96■□□□□ 0.47
CLN3-239ENST00000628023 BTN2A2Q8WVV5 523 aa17.96■□□□□ 0.47
CLN3-239ENST00000628023 SLCO2A1Q92959 643 aa17.96■□□□□ 0.47
CLN3-239ENST00000628023 TSACCQ96A04 125 aaPredicted RBP17.96■□□□□ 0.47
CLN3-239ENST00000628023 HIC2Q96JB3 615 aa17.96■□□□□ 0.47
CLN3-239ENST00000628023 KRT12Q99456 494 aa17.96■□□□□ 0.47
CLN3-239ENST00000628023 SUDS3Q9H7L9 328 aaPredicted RBP17.96■□□□□ 0.47
CLN3-239ENST00000628023 CASS4Q9NQ75 786 aa17.96■□□□□ 0.47
CLN3-239ENST00000628023 RALYQ9UKM9 306 aaKnown RBP17.96■□□□□ 0.47
CLN3-239ENST00000628023 PKD1L2Q7Z442 2459 aa17.95■□□□□ 0.46
CLN3-239ENST00000628023 TMEM202A6NGA9 273 aa17.95■□□□□ 0.46
CLN3-239ENST00000628023 FADS2P1A8MWK0 482 aa17.95■□□□□ 0.46
CLN3-239ENST00000628023 AP3B1O00203 1094 aa17.95■□□□□ 0.46
CLN3-239ENST00000628023 RASGRP1O95267 797 aa17.95■□□□□ 0.46
CLN3-239ENST00000628023 CTSEP14091 401 aa17.95■□□□□ 0.46
CLN3-239ENST00000628023 SESN2P58004 480 aaPredicted RBP17.95■□□□□ 0.46
CLN3-239ENST00000628023 C2orf54Q08AI8 447 aa17.95■□□□□ 0.46
CLN3-239ENST00000628023 BNIP3Q12983 259 aa17.95■□□□□ 0.46
CLN3-239ENST00000628023 KCNJ11Q14654 390 aa17.95■□□□□ 0.46
CLN3-239ENST00000628023 SHBQ15464 509 aa17.95■□□□□ 0.46
CLN3-239ENST00000628023 ALG11Q2TAA5 492 aa17.95■□□□□ 0.46
CLN3-239ENST00000628023 CERCAMQ5T4B2 595 aa17.95■□□□□ 0.46
CLN3-239ENST00000628023 PDPK2PQ6A1A2 396 aa17.95■□□□□ 0.46
CLN3-239ENST00000628023 TMPRSS7Q7RTY8 843 aa17.95■□□□□ 0.46
CLN3-239ENST00000628023 RBFAQ8N0V3 343 aa17.95■□□□□ 0.46
CLN3-239ENST00000628023 SPATA4Q8NEY3 305 aa17.95■□□□□ 0.46
CLN3-239ENST00000628023 PPHLN1Q8NEY8 458 aaKnown RBP17.95■□□□□ 0.46
CLN3-239ENST00000628023 OR13C4Q8NGS5 318 aa17.95■□□□□ 0.46
CLN3-239ENST00000628023 PDXPQ96GD0 296 aa17.95■□□□□ 0.46
CLN3-239ENST00000628023 FGF22Q9HCT0 170 aa17.95■□□□□ 0.46
CLN3-239ENST00000628023 CDC23Q9UJX2 597 aa17.95■□□□□ 0.46
CLN3-239ENST00000628023 BTBD3Q9Y2F9 522 aa17.95■□□□□ 0.46
CLN3-239ENST00000628023 NEU2Q9Y3R4 380 aa17.95■□□□□ 0.46
CLN3-239ENST00000628023 KCTD3Q9Y597 815 aa17.95■□□□□ 0.46
CLN3-239ENST00000628023 SCN8AQ9UQD0 1980 aa17.95■□□□□ 0.46
CLN3-239ENST00000628023 ANKRD11Q6UB99 2663 aaPredicted RBP17.95■□□□□ 0.46
CLN3-239ENST00000628023 CCDC78A2IDD5 438 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 HEATR9A2RTY3 570 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 SCAMP1O15126 338 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 LDB2O43679 373 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 TNFP01375 233 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 HADHAP40939 763 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 PTGIRP43119 386 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 ZNF140P52738 457 aaPredicted RBP17.94■□□□□ 0.46
CLN3-239ENST00000628023 HK3P52790 923 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 MSLNQ13421 630 aaPredicted RBP17.94■□□□□ 0.46
CLN3-239ENST00000628023 LAMB3Q13751 1172 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 ITGA9Q13797 1035 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 DHX34Q14147 1143 aaKnown RBP17.94■□□□□ 0.46
CLN3-239ENST00000628023 TCEA2Q15560 299 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 CCDC38Q502W7 563 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 PRRT3Q5FWE3 981 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 JAMLQ86YT9 394 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 PHYKPLQ8IUZ5 450 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 ZNF548Q8NEK5 533 aaPredicted RBP17.94■□□□□ 0.46
CLN3-239ENST00000628023 KIF18AQ8NI77 898 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 GDAP1Q8TB36 358 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 LMX1AQ8TE12 382 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 SAP25Q8TEE9 199 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 OR1E3Q8WZA6 343 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 CPT1BQ92523 772 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 DNAJC1Q96KC8 554 aaKnown RBP17.94■□□□□ 0.46
CLN3-239ENST00000628023 CARS2Q9HA77 564 aaKnown RBP17.94■□□□□ 0.46
CLN3-239ENST00000628023 CYP4F12Q9HCS2 524 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 IL26Q9NPH9 171 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 SPASTQ9UBP0 616 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 FTSJ1Q9UET6 329 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 FKBPLQ9UIM3 349 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 APPL1Q9UKG1 709 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 LHX6Q9UPM6 363 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms