RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 RTP5Q14D33 572 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 DEFB133Q30KQ1 61 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 ARMC12Q5T9G4 340 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 ENPP7Q6UWV6 458 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 C4orf22Q6V702 233 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 KDM7AQ6ZMT4 941 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 PID1Q7Z2X4 250 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 TMC3Q7Z5M5 1100 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 HOOK3Q86VS8 718 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 CBARPQ8N350 705 aaPredicted RBP12.62□□□□□ -0.39
PNKP-217ENST00000625216 PDCD6IPQ8WUM4 868 aaKnown RBP12.62□□□□□ -0.39
PNKP-217ENST00000625216 NXPE2Q96DL1 559 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 SCRN2Q96FV2 425 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 TEKT5Q96M29 485 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 WDR92Q96MX6 357 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 AGAP3Q96P47 875 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 VAT1Q99536 393 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 FERMT1Q9BQL6 677 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 LRRC61Q9BV99 259 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 BOCQ9BWV1 1114 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 TXLNGYQ9BZA5 131 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 POLR1EQ9GZS1 481 aaKnown RBP12.62□□□□□ -0.39
PNKP-217ENST00000625216 ABCG4Q9H172 646 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 ARFGAP3Q9NP61 516 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 B4GALT6Q9UBX8 382 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 RSPH14Q9UHP6 348 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 PPIL1Q9Y3C6 166 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 U3KQA8 63 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 GOLGA4Q13439 2230 aaKnown RBP12.62□□□□□ -0.39
PNKP-217ENST00000625216 TTC24A2A3L6 582 aaPredicted RBP12.61□□□□□ -0.39
PNKP-217ENST00000625216 GOLGA8MH3BSY2 632 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 PSMD11O00231 422 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 TNFRSF10CO14798 259 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 YY2O15391 372 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 PGLSO95336 258 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 TNFP01375 233 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 PCCBP05166 539 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 CTSEP14091 401 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 TSHRP16473 764 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 KIAA1024LP59773 190 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 SRP54P61011 504 aaKnown RBP12.61□□□□□ -0.39
PNKP-217ENST00000625216 MAXP61244 160 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 SEMG2Q02383 582 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 C1orf61Q13536 156 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 ACOX1Q15067 660 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 NR0B2Q15466 257 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 ALG11Q2TAA5 492 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 C6orf132Q5T0Z8 1188 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 UBAP2Q5T6F2 1119 aaKnown RBP12.61□□□□□ -0.39
PNKP-217ENST00000625216 CDCP2Q5VXM1 449 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 ALG1LQ6GMV1 187 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 ESRP1Q6NXG1 681 aaKnown RBP12.61□□□□□ -0.39
PNKP-217ENST00000625216 USP45Q70EL2 814 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 ZNF534Q76KX8 674 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 PCGF5Q86SE9 256 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 HID1Q8IV36 788 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 KLHDC8BQ8IXV7 354 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 RBFAQ8N0V3 343 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 NAT6Q93015 286 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 GRAMD1AQ96CP6 724 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 COQ10AQ96MF6 247 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 MCCC1Q96RQ3 725 aaPredicted RBP12.61□□□□□ -0.39
PNKP-217ENST00000625216 SEMA3CQ99985 751 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 MLPHQ9BV36 600 aaPredicted RBP12.61□□□□□ -0.39
PNKP-217ENST00000625216 CLPBQ9H078 707 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 TCEAL2Q9H3H9 227 aaPredicted RBP12.61□□□□□ -0.39
PNKP-217ENST00000625216 CAAP1Q9H8G2 361 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 GLOD4Q9HC38 313 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 NT5MQ9NPB1 228 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 RBM22Q9NW64 420 aaKnown RBP eCLIP12.61□□□□□ -0.39
PNKP-217ENST00000625216 KLQ9UEF7 1012 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 MTRF1LQ9UGC7 380 aaKnown RBP12.61□□□□□ -0.39
PNKP-217ENST00000625216 TRHDEQ9UKU6 1024 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 PNMA8BQ9ULN7 279 aaPredicted RBP12.61□□□□□ -0.39
PNKP-217ENST00000625216 DOLKQ9UPQ8 538 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 OR1A2Q9Y585 309 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 DGKBQ9Y6T7 804 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 WDFY3Q8IZQ1 3526 aa12.61□□□□□ -0.39
PNKP-217ENST00000625216 CFAP47Q6ZTR5 3102 aa12.6□□□□□ -0.39
PNKP-217ENST00000625216 ANKRD11Q6UB99 2663 aaPredicted RBP12.6□□□□□ -0.39
PNKP-217ENST00000625216 CHD6Q8TD26 2715 aa12.6□□□□□ -0.39
PNKP-217ENST00000625216 NDC80O14777 642 aa12.6□□□□□ -0.39
PNKP-217ENST00000625216 TPSB2P20231 275 aa12.6□□□□□ -0.39
PNKP-217ENST00000625216 CA4P22748 312 aa12.6□□□□□ -0.39
PNKP-217ENST00000625216 CLDN6P56747 220 aa12.6□□□□□ -0.39
PNKP-217ENST00000625216 ITKQ08881 620 aa12.6□□□□□ -0.39
PNKP-217ENST00000625216 TRAF2Q12933 501 aa12.6□□□□□ -0.39
PNKP-217ENST00000625216 ARHGEF7Q14155 803 aa12.6□□□□□ -0.39
PNKP-217ENST00000625216 TPSAB1Q15661 275 aa12.6□□□□□ -0.39
PNKP-217ENST00000625216 UAP1Q16222 522 aaPredicted RBP12.6□□□□□ -0.39
PNKP-217ENST00000625216 CNGA3Q16281 694 aa12.6□□□□□ -0.39
PNKP-217ENST00000625216 PARP6Q2NL67 630 aa12.6□□□□□ -0.39
PNKP-217ENST00000625216 ITPRIPL1Q6GPH6 555 aa12.6□□□□□ -0.39
PNKP-217ENST00000625216 PNCKQ6P2M8 343 aa12.6□□□□□ -0.39
PNKP-217ENST00000625216 CCDC25Q86WR0 208 aa12.6□□□□□ -0.39
PNKP-217ENST00000625216 GKN2Q86XP6 184 aa12.6□□□□□ -0.39
PNKP-217ENST00000625216 MREGQ8N565 214 aa12.6□□□□□ -0.39
PNKP-217ENST00000625216 PLA2G15Q8NCC3 412 aa12.6□□□□□ -0.39
PNKP-217ENST00000625216 OR56A4Q8NGH8 313 aa12.6□□□□□ -0.39
PNKP-217ENST00000625216 WDR48Q8TAF3 677 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms