RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 SLC35G6P0C7Q6 338 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 ADH5P11766 374 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 H2AFXP16104 143 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-219ENST00000620786 NRIP1P48552 1158 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 HNMTP50135 292 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 LRRC73Q5JTD7 316 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 SLC43A3Q8NBI5 491 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 OR10H5Q8NGA6 315 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 IKZF3Q9UKT9 509 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 PCDHGC3Q9UN70 934 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 ENPP3O14638 875 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 GIMD1P0DJR0 217 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 MMP8P22894 467 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 HNRNPH1P31943 449 aaKnown RBP11.33□□□□□ -0.6
CLIP1-219ENST00000620786 TNK2Q07912 1038 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 ARMC4Q5T2S8 1044 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 RTL3Q8N8U3 475 aaKnown RBP11.33□□□□□ -0.6
CLIP1-219ENST00000620786 FBXO15Q8NCQ5 510 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-219ENST00000620786 DNASE1L2Q92874 299 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 Q96MT0 163 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 GPR21Q99679 349 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 COPG2Q9UBF2 871 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 HOXC12P31275 282 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 LGALS3BPQ08380 585 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 NDUFAF6Q330K2 333 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 ARCQ7LC44 396 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 CMC1Q7Z7K0 106 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 SERPINA9Q86WD7 417 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 PYROXD2Q8N2H3 581 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 SLC22A17Q8WUG5 538 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 MIEF2Q96C03 454 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 NUS1Q96E22 293 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 GAL3ST4Q96RP7 486 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 RHOBTB2Q9BYZ6 727 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 TCRBV9S1A1TA0A576 114 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 ENO4A6NNW6 628 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 FSCN2O14926 492 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 MATN3O15232 486 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 PPIBP23284 216 aaKnown RBP11.32□□□□□ -0.6
CLIP1-219ENST00000620786 RFC2P35250 354 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 PSME3P61289 254 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 SLC34A1Q06495 639 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 TIGD5Q53EQ6 642 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 MON1BQ7L1V2 547 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 SLC26A9Q7LBE3 791 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 PEG10Q86TG7 708 aaKnown RBP11.32□□□□□ -0.6
CLIP1-219ENST00000620786 PHC3Q8NDX5 983 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 SRFBP1Q8NEF9 429 aaKnown RBP11.32□□□□□ -0.6
CLIP1-219ENST00000620786 MAGEE2Q8TD90 523 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-219ENST00000620786 NEK7Q8TDX7 302 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 SLC9A6Q92581 669 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 RHOJQ9H4E5 214 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 SAR1AQ9NR31 198 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 TLR9Q9NR96 1032 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 COPS7AQ9UBW8 275 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 FBXW2Q9UKT8 454 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 A0A1W2PQ45 241 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-219ENST00000620786 A0A1W2PQY0 241 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 BIRC5O15392 142 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 UGT1A5P35504 534 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 RPIAP49247 311 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 DLG2Q15700 870 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 CARD16Q5EG05 197 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 SLC25A24Q6NUK1 477 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 SLC30A9Q6PML9 568 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 KLHL24Q6TFL4 600 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 JAZF1Q86VZ6 243 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 VANGL1Q8TAA9 524 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-219ENST00000620786 PTCD2Q8WV60 388 aaKnown RBP11.32□□□□□ -0.6
CLIP1-219ENST00000620786 SLC47A1Q96FL8 570 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 ATG10Q9H0Y0 220 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 DDX18Q9NVP1 670 aaKnown RBP11.32□□□□□ -0.6
CLIP1-219ENST00000620786 CACNG4Q9UBN1 327 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 GSTK1Q9Y2Q3 226 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 MFHAS1Q9Y4C4 1052 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 ATP6AP2A0A1C7CYW4 349 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 INPPL1O15357 1258 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 ATP6AP2O75787 350 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 ATP6V1G2O95670 118 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 TCEA1P23193 301 aaKnown RBP11.32□□□□□ -0.6
CLIP1-219ENST00000620786 CDH13P55290 713 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 DAOAP59103 153 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 TBC1D25Q3MII6 688 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 LPCAT2Q7L5N7 544 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 PRSS58Q8IYP2 241 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 UBR7Q8N806 425 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 DLG3Q92796 817 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 PMEPA1Q969W9 287 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 EXOSC8Q96B26 276 aaKnown RBP11.32□□□□□ -0.6
CLIP1-219ENST00000620786 NECTIN3Q9NQS3 549 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 HCN3Q9P1Z3 774 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 YIPF1Q9Y548 306 aa11.32□□□□□ -0.6
CLIP1-219ENST00000620786 IGLV3-22A0A075B6J6 115 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 CPED1A4D0V7 1026 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 E7ENQ6 273 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 SLC22A3O75751 556 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 LRIG2O94898 1065 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 TPSB2P20231 275 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 DDX6P26196 483 aaKnown RBP eCLIP11.31□□□□□ -0.6
CLIP1-219ENST00000620786 IL12BP29460 328 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms