RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 F8W8V4 182 aa12.34□□□□□ -0.43
CIITA-212ENST00000618207 CLASP2O75122 1294 aaKnown RBP12.34□□□□□ -0.43
CIITA-212ENST00000618207 CDK14O94921 469 aa12.34□□□□□ -0.43
CIITA-212ENST00000618207 C8AP07357 584 aa12.34□□□□□ -0.43
CIITA-212ENST00000618207 LINC00032P0C843 101 aa12.34□□□□□ -0.43
CIITA-212ENST00000618207 CTSOP43234 321 aaPredicted RBP12.34□□□□□ -0.43
CIITA-212ENST00000618207 HERVK_113P63132 956 aa12.34□□□□□ -0.43
CIITA-212ENST00000618207 LAMB3Q13751 1172 aa12.34□□□□□ -0.43
CIITA-212ENST00000618207 KIF19Q2TAC6 998 aa12.34□□□□□ -0.43
CIITA-212ENST00000618207 LMNTD2Q8IXW0 634 aa12.34□□□□□ -0.43
CIITA-212ENST00000618207 FBXO39Q8N4B4 442 aa12.34□□□□□ -0.43
CIITA-212ENST00000618207 HJURPQ8NCD3 748 aaPredicted RBP12.34□□□□□ -0.43
CIITA-212ENST00000618207 GPR150Q8NGU9 434 aa12.34□□□□□ -0.43
CIITA-212ENST00000618207 RP9Q8TA86 221 aaKnown RBP12.34□□□□□ -0.43
CIITA-212ENST00000618207 ZNF333Q96JL9 665 aa12.34□□□□□ -0.43
CIITA-212ENST00000618207 HBEGFQ99075 208 aa12.34□□□□□ -0.43
CIITA-212ENST00000618207 SLC39A3Q9BRY0 314 aa12.34□□□□□ -0.43
CIITA-212ENST00000618207 BOCQ9BWV1 1114 aa12.34□□□□□ -0.43
CIITA-212ENST00000618207 ERVK-6Q9BXR3 956 aa12.34□□□□□ -0.43
CIITA-212ENST00000618207 SEZ6LQ9BYH1 1024 aa12.34□□□□□ -0.43
CIITA-212ENST00000618207 WDR41Q9HAD4 459 aa12.34□□□□□ -0.43
CIITA-212ENST00000618207 CCL26Q9Y258 94 aa12.34□□□□□ -0.43
CIITA-212ENST00000618207 PKP3Q9Y446 797 aa12.34□□□□□ -0.43
CIITA-212ENST00000618207 ARIH1Q9Y4X5 557 aaPredicted RBP12.34□□□□□ -0.43
CIITA-212ENST00000618207 SLC30A1Q9Y6M5 507 aa12.34□□□□□ -0.43
CIITA-212ENST00000618207 C1orf232A0A0U1RR37 186 aa12.33□□□□□ -0.43
CIITA-212ENST00000618207 ECI2O75521 394 aa12.33□□□□□ -0.43
CIITA-212ENST00000618207 CRCPO75575 148 aa12.33□□□□□ -0.43
CIITA-212ENST00000618207 WISP3O95389 354 aaPredicted RBP12.33□□□□□ -0.43
CIITA-212ENST00000618207 CLDN7O95471 211 aa12.33□□□□□ -0.43
CIITA-212ENST00000618207 CXCL14O95715 111 aa12.33□□□□□ -0.43
CIITA-212ENST00000618207 PKMP14618 531 aaKnown RBP12.33□□□□□ -0.43
CIITA-212ENST00000618207 LAG3P18627 525 aa12.33□□□□□ -0.43
CIITA-212ENST00000618207 XRCC1P18887 633 aaPredicted RBP12.33□□□□□ -0.43
CIITA-212ENST00000618207 DNAJB1P25685 340 aa12.33□□□□□ -0.43
CIITA-212ENST00000618207 CCNHP51946 323 aaPredicted RBP12.33□□□□□ -0.43
CIITA-212ENST00000618207 RAD51Q06609 339 aa12.33□□□□□ -0.43
CIITA-212ENST00000618207 FASTKQ14296 549 aaKnown RBP12.33□□□□□ -0.43
CIITA-212ENST00000618207 RFTN1Q14699 578 aaPredicted RBP12.33□□□□□ -0.43
CIITA-212ENST00000618207 SLC5A9Q2M3M2 681 aa12.33□□□□□ -0.43
CIITA-212ENST00000618207 TYSND1Q2T9J0 566 aa12.33□□□□□ -0.43
CIITA-212ENST00000618207 PGM2L1Q6PCE3 622 aa12.33□□□□□ -0.43
CIITA-212ENST00000618207 PAOXQ6QHF9 649 aa12.33□□□□□ -0.43
CIITA-212ENST00000618207 RNF111Q6ZNA4 994 aa12.33□□□□□ -0.43
CIITA-212ENST00000618207 RAB44Q7Z6P3 723 aaPredicted RBP12.33□□□□□ -0.43
CIITA-212ENST00000618207 DDX53Q86TM3 631 aaKnown RBP12.33□□□□□ -0.43
CIITA-212ENST00000618207 TCEAL8Q8IYN2 117 aa12.33□□□□□ -0.43
CIITA-212ENST00000618207 AFAP1L2Q8N4X5 818 aa12.33□□□□□ -0.43
CIITA-212ENST00000618207 ST13P5Q8NFI4 369 aaPredicted RBP12.33□□□□□ -0.43
CIITA-212ENST00000618207 MICAL1Q8TDZ2 1067 aa12.33□□□□□ -0.43
CIITA-212ENST00000618207 LINGO1Q96FE5 620 aa12.33□□□□□ -0.43
CIITA-212ENST00000618207 TOX2Q96NM4 488 aa12.33□□□□□ -0.43
CIITA-212ENST00000618207 ATOH8Q96SQ7 321 aa12.33□□□□□ -0.43
CIITA-212ENST00000618207 CHCHD3Q9NX63 227 aaKnown RBP12.33□□□□□ -0.43
CIITA-212ENST00000618207 TRMT6Q9UJA5 497 aaKnown RBP12.33□□□□□ -0.43
CIITA-212ENST00000618207 LSM7Q9UK45 103 aaKnown RBP12.33□□□□□ -0.43
CIITA-212ENST00000618207 ANGPTL2Q9UKU9 493 aa12.33□□□□□ -0.43
CIITA-212ENST00000618207 LRRC42Q9Y546 428 aa12.33□□□□□ -0.43
CIITA-212ENST00000618207 ASB1Q9Y576 335 aa12.33□□□□□ -0.43
CIITA-212ENST00000618207 DNAJC15Q9Y5T4 150 aa12.33□□□□□ -0.43
CIITA-212ENST00000618207 MAP3K7O43318 606 aa12.33□□□□□ -0.44
CIITA-212ENST00000618207 GREM1O60565 184 aa12.33□□□□□ -0.44
CIITA-212ENST00000618207 RFPL2O75678 378 aa12.33□□□□□ -0.44
CIITA-212ENST00000618207 PARNO95453 639 aaKnown RBP12.33□□□□□ -0.44
CIITA-212ENST00000618207 SOX11P35716 441 aa12.33□□□□□ -0.44
CIITA-212ENST00000618207 MRPS22P82650 360 aaKnown RBP12.33□□□□□ -0.44
CIITA-212ENST00000618207 LMAN2Q12907 356 aa12.33□□□□□ -0.44
CIITA-212ENST00000618207 C18orf21Q32NC0 220 aaPredicted RBP12.33□□□□□ -0.44
CIITA-212ENST00000618207 CTSL3PQ5NE16 218 aa12.33□□□□□ -0.44
CIITA-212ENST00000618207 ARMC12Q5T9G4 340 aa12.33□□□□□ -0.44
CIITA-212ENST00000618207 IZUMO2Q6UXV1 221 aa12.33□□□□□ -0.44
CIITA-212ENST00000618207 CYHR1Q6ZMK1 362 aa12.33□□□□□ -0.44
CIITA-212ENST00000618207 HMGCLL1Q8TB92 370 aa12.33□□□□□ -0.44
CIITA-212ENST00000618207 CDK15Q96Q40 435 aa12.33□□□□□ -0.44
CIITA-212ENST00000618207 CCDC28BQ9BUN5 200 aa12.33□□□□□ -0.44
CIITA-212ENST00000618207 HERC2P3Q9BVR0 1158 aa12.33□□□□□ -0.44
CIITA-212ENST00000618207 S100A14Q9HCY8 104 aa12.33□□□□□ -0.44
CIITA-212ENST00000618207 ZNF711Q9Y462 761 aa12.33□□□□□ -0.44
CIITA-212ENST00000618207 COL4A6Q14031 1691 aa12.33□□□□□ -0.44
CIITA-212ENST00000618207 ABHD14A-ACY1A0A1B0GW23 586 aa12.33□□□□□ -0.44
CIITA-212ENST00000618207 PIP5K1BO14986 540 aa12.33□□□□□ -0.44
CIITA-212ENST00000618207 CCNT2O60583 730 aaKnown RBP12.33□□□□□ -0.44
CIITA-212ENST00000618207 VPS26AO75436 327 aa12.33□□□□□ -0.44
CIITA-212ENST00000618207 CCNG1P51959 295 aa12.33□□□□□ -0.44
CIITA-212ENST00000618207 MTTPP55157 894 aa12.33□□□□□ -0.44
CIITA-212ENST00000618207 UGT3A1Q6NUS8 523 aa12.33□□□□□ -0.44
CIITA-212ENST00000618207 BNC2Q6ZN30 1099 aaPredicted RBP12.33□□□□□ -0.44
CIITA-212ENST00000618207 DRAXINQ8NBI3 349 aaPredicted RBP12.33□□□□□ -0.44
CIITA-212ENST00000618207 STAG3L4Q8TBR4 150 aa12.33□□□□□ -0.44
CIITA-212ENST00000618207 UCMAQ8WVF2 138 aa12.33□□□□□ -0.44
CIITA-212ENST00000618207 C19orf60Q96EN9 201 aa12.33□□□□□ -0.44
CIITA-212ENST00000618207 MYO19Q96H55 970 aa12.33□□□□□ -0.44
CIITA-212ENST00000618207 SYTL2Q9HCH5 934 aa12.33□□□□□ -0.44
CIITA-212ENST00000618207 CD274Q9NZQ7 290 aa12.33□□□□□ -0.44
CIITA-212ENST00000618207 PSMD12O00232 456 aaPredicted RBP12.32□□□□□ -0.44
CIITA-212ENST00000618207 TRIM16O95361 564 aa12.32□□□□□ -0.44
CIITA-212ENST00000618207 GUCA1CO95843 209 aa12.32□□□□□ -0.44
CIITA-212ENST00000618207 WEE1P30291 646 aa12.32□□□□□ -0.44
CIITA-212ENST00000618207 MS4A2Q01362 244 aa12.32□□□□□ -0.44
CIITA-212ENST00000618207 RALGDSQ12967 914 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms