RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 NT5MQ9NPB1 228 aa18.85■□□□□ 0.61
CDX1-202ENST00000616154 A0A0A6YYK5 440 aaPredicted RBP18.84■□□□□ 0.61
CDX1-202ENST00000616154 PDHA1P08559 390 aa18.84■□□□□ 0.61
CDX1-202ENST00000616154 CCL4P13236 92 aa18.84■□□□□ 0.61
CDX1-202ENST00000616154 LIMK2P53671 638 aa18.84■□□□□ 0.61
CDX1-202ENST00000616154 BIRC2Q13490 618 aa18.84■□□□□ 0.61
CDX1-202ENST00000616154 SQSTM1Q13501 440 aa18.84■□□□□ 0.61
CDX1-202ENST00000616154 TRA2AQ13595 282 aaKnown RBP eCLIP18.84■□□□□ 0.61
CDX1-202ENST00000616154 TAZQ16635 292 aa18.84■□□□□ 0.61
CDX1-202ENST00000616154 LRRC66Q68CR7 880 aa18.84■□□□□ 0.61
CDX1-202ENST00000616154 DOK6Q6PKX4 331 aa18.84■□□□□ 0.61
CDX1-202ENST00000616154 RFLNAQ6ZTI6 216 aa18.84■□□□□ 0.61
CDX1-202ENST00000616154 ZNF765Q7L2R6 523 aa18.84■□□□□ 0.61
CDX1-202ENST00000616154 EXTL1Q92935 676 aa18.84■□□□□ 0.61
CDX1-202ENST00000616154 CCDC74BQ96LY2 380 aa18.84■□□□□ 0.61
CDX1-202ENST00000616154 OR2M4Q96R27 311 aa18.84■□□□□ 0.61
CDX1-202ENST00000616154 CD84Q9UIB8 345 aa18.84■□□□□ 0.61
CDX1-202ENST00000616154 ADGRG1Q9Y653 693 aa18.84■□□□□ 0.61
CDX1-202ENST00000616154 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.84■□□□□ 0.61
CDX1-202ENST00000616154 A0A0J9YYE9 177 aa18.83■□□□□ 0.61
CDX1-202ENST00000616154 LRRD1A4D1F6 860 aa18.83■□□□□ 0.61
CDX1-202ENST00000616154 PPM1DO15297 605 aa18.83■□□□□ 0.61
CDX1-202ENST00000616154 SLC28A2O43868 658 aa18.83■□□□□ 0.61
CDX1-202ENST00000616154 TRBC1P01850 177 aa18.83■□□□□ 0.61
CDX1-202ENST00000616154 PYGLP06737 847 aa18.83■□□□□ 0.61
CDX1-202ENST00000616154 ZNF30P17039 623 aa18.83■□□□□ 0.61
CDX1-202ENST00000616154 ACTR1BP42025 376 aa18.83■□□□□ 0.61
CDX1-202ENST00000616154 MAGEA1P43355 309 aa18.83■□□□□ 0.61
CDX1-202ENST00000616154 ACTR1AP61163 376 aa18.83■□□□□ 0.61
CDX1-202ENST00000616154 PTSQ03393 145 aa18.83■□□□□ 0.61
CDX1-202ENST00000616154 PPIDQ08752 370 aaKnown RBP18.83■□□□□ 0.61
CDX1-202ENST00000616154 IHHQ14623 411 aa18.83■□□□□ 0.61
CDX1-202ENST00000616154 RHOT1Q8IXI2 618 aa18.83■□□□□ 0.61
CDX1-202ENST00000616154 ZSCAN1Q8NBB4 408 aa18.83■□□□□ 0.61
CDX1-202ENST00000616154 RCBTB1Q8NDN9 531 aa18.83■□□□□ 0.61
CDX1-202ENST00000616154 OR4D9Q8NGE8 314 aa18.83■□□□□ 0.61
CDX1-202ENST00000616154 OLFM3Q96PB7 478 aa18.83■□□□□ 0.61
CDX1-202ENST00000616154 DPYSL5Q9BPU6 564 aa18.83■□□□□ 0.61
CDX1-202ENST00000616154 DDX56Q9NY93 547 aaKnown RBP18.83■□□□□ 0.61
CDX1-202ENST00000616154 PLEKHM1Q9Y4G2 1056 aa18.83■□□□□ 0.61
CDX1-202ENST00000616154 PCDHGA3Q9Y5H0 932 aa18.83■□□□□ 0.61
CDX1-202ENST00000616154 IGHV1OR21-1A0A087WYE8 117 aa18.82■□□□□ 0.6
CDX1-202ENST00000616154 A0A0U1RQS6 177 aa18.82■□□□□ 0.6
CDX1-202ENST00000616154 STMND1H3BQB6 276 aa18.82■□□□□ 0.6
CDX1-202ENST00000616154 WT1P19544 449 aaPredicted RBP18.82■□□□□ 0.6
CDX1-202ENST00000616154 COMTP21964 271 aa18.82■□□□□ 0.6
CDX1-202ENST00000616154 IFI35P80217 286 aaPredicted RBP18.82■□□□□ 0.6
CDX1-202ENST00000616154 ITKQ08881 620 aa18.82■□□□□ 0.6
CDX1-202ENST00000616154 PYCR3Q53H96 274 aa18.82■□□□□ 0.6
CDX1-202ENST00000616154 RAVER1Q8IY67 606 aaKnown RBP18.82■□□□□ 0.6
CDX1-202ENST00000616154 ARRDC2Q8TBH0 407 aa18.82■□□□□ 0.6
CDX1-202ENST00000616154 SCAMP4Q969E2 229 aa18.82■□□□□ 0.6
CDX1-202ENST00000616154 SMIM14Q96QK8 99 aa18.82■□□□□ 0.6
CDX1-202ENST00000616154 TAAR9Q96RI9 348 aa18.82■□□□□ 0.6
CDX1-202ENST00000616154 ARHGAP9Q9BRR9 750 aa18.82■□□□□ 0.6
CDX1-202ENST00000616154 HAUS2Q9NVX0 235 aa18.82■□□□□ 0.6
CDX1-202ENST00000616154 DNPEPQ9ULA0 475 aa18.82■□□□□ 0.6
CDX1-202ENST00000616154 TMEM98Q9Y2Y6 226 aa18.82■□□□□ 0.6
CDX1-202ENST00000616154 PSTPIP1O43586 416 aa18.81■□□□□ 0.6
CDX1-202ENST00000616154 MAP3K6O95382 1288 aa18.81■□□□□ 0.6
CDX1-202ENST00000616154 THRAP10827 490 aa18.81■□□□□ 0.6
CDX1-202ENST00000616154 FGF3P11487 239 aaPredicted RBP18.81■□□□□ 0.6
CDX1-202ENST00000616154 ZFXP17010 805 aaPredicted RBP18.81■□□□□ 0.6
CDX1-202ENST00000616154 CSF2RBP32927 897 aa18.81■□□□□ 0.6
CDX1-202ENST00000616154 DEKP35659 375 aaKnown RBP18.81■□□□□ 0.6
CDX1-202ENST00000616154 FASLGP48023 281 aa18.81■□□□□ 0.6
CDX1-202ENST00000616154 STC1P52823 247 aa18.81■□□□□ 0.6
CDX1-202ENST00000616154 GPLD1P80108 840 aa18.81■□□□□ 0.6
CDX1-202ENST00000616154 NFATC3Q12968 1075 aa18.81■□□□□ 0.6
CDX1-202ENST00000616154 LRP8Q14114 963 aa18.81■□□□□ 0.6
CDX1-202ENST00000616154 SPA17Q15506 151 aa18.81■□□□□ 0.6
CDX1-202ENST00000616154 NKAIN2Q5VXU1 208 aa18.81■□□□□ 0.6
CDX1-202ENST00000616154 ZNF662Q6ZS27 426 aa18.81■□□□□ 0.6
CDX1-202ENST00000616154 TRIM74Q86UV6 250 aa18.81■□□□□ 0.6
CDX1-202ENST00000616154 CCDC13Q8IYE1 715 aa18.81■□□□□ 0.6
CDX1-202ENST00000616154 NRSN1Q8IZ57 195 aa18.81■□□□□ 0.6
CDX1-202ENST00000616154 AGBL5Q8NDL9 886 aa18.81■□□□□ 0.6
CDX1-202ENST00000616154 ACRBPQ8NEB7 543 aa18.81■□□□□ 0.6
CDX1-202ENST00000616154 COX14Q96I36 57 aa18.81■□□□□ 0.6
CDX1-202ENST00000616154 TDRD1Q9BXT4 1180 aaKnown RBP18.81■□□□□ 0.6
CDX1-202ENST00000616154 STARD5Q9NSY2 213 aa18.81■□□□□ 0.6
CDX1-202ENST00000616154 RBM22Q9NW64 420 aaKnown RBP eCLIP18.81■□□□□ 0.6
CDX1-202ENST00000616154 KCNK4Q9NYG8 393 aa18.81■□□□□ 0.6
CDX1-202ENST00000616154 PCDHA13Q9Y5I0 950 aa18.81■□□□□ 0.6
CDX1-202ENST00000616154 PJA2O43164 708 aa18.8■□□□□ 0.6
CDX1-202ENST00000616154 IPO7O95373 1038 aaKnown RBP18.8■□□□□ 0.6
CDX1-202ENST00000616154 HLA-DQB2P05538 268 aa18.8■□□□□ 0.6
CDX1-202ENST00000616154 ARSDP51689 593 aa18.8■□□□□ 0.6
CDX1-202ENST00000616154 EPHB1P54762 984 aa18.8■□□□□ 0.6
CDX1-202ENST00000616154 RPL26P61254 145 aaKnown RBP18.8■□□□□ 0.6
CDX1-202ENST00000616154 DSC2Q02487 901 aa18.8■□□□□ 0.6
CDX1-202ENST00000616154 TBR1Q16650 682 aa18.8■□□□□ 0.6
CDX1-202ENST00000616154 C11orf63Q6NUN7 778 aa18.8■□□□□ 0.6
CDX1-202ENST00000616154 GALNT13Q8IUC8 556 aa18.8■□□□□ 0.6
CDX1-202ENST00000616154 EXD1Q8NHP7 514 aa18.8■□□□□ 0.6
CDX1-202ENST00000616154 PMEPA1Q969W9 287 aa18.8■□□□□ 0.6
CDX1-202ENST00000616154 AGAP2Q99490 1192 aa18.8■□□□□ 0.6
CDX1-202ENST00000616154 DESI2Q9BSY9 194 aa18.8■□□□□ 0.6
CDX1-202ENST00000616154 DDA1Q9BW61 102 aa18.8■□□□□ 0.6
CDX1-202ENST00000616154 FAM117AQ9C073 453 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms