RNA–Protein interactions for RNA: ENST00000616053.4

TCF4-248, Transcript of transcription factor 4, humanhuman

TSL 5 BASIC

Gene TCF4, Length 8,140 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-248ENST00000616053 TSPAN16Q9UKR8 245 aa12.6□□□□□ -0.39
TCF4-248ENST00000616053 PCDHGB1Q9Y5G3 927 aa12.6□□□□□ -0.39
TCF4-248ENST00000616053 ATXN2Q99700 1313 aaKnown RBP12.6□□□□□ -0.39
TCF4-248ENST00000616053 ANKRD65E5RJM6 399 aa12.6□□□□□ -0.39
TCF4-248ENST00000616053 NR2C1P13056 603 aa12.6□□□□□ -0.39
TCF4-248ENST00000616053 FASTKD3Q14CZ7 662 aaKnown RBP12.6□□□□□ -0.39
TCF4-248ENST00000616053 RFTN2Q52LD8 501 aaPredicted RBP12.6□□□□□ -0.39
TCF4-248ENST00000616053 PIK3C3Q8NEB9 887 aa12.6□□□□□ -0.39
TCF4-248ENST00000616053 DNERQ8NFT8 737 aa12.6□□□□□ -0.39
TCF4-248ENST00000616053 SMARCD2Q92925 531 aa12.6□□□□□ -0.39
TCF4-248ENST00000616053 MYDGFQ969H8 173 aa12.6□□□□□ -0.39
TCF4-248ENST00000616053 S100PBPQ96BU1 408 aa12.6□□□□□ -0.39
TCF4-248ENST00000616053 PHF12Q96QT6 1004 aa12.6□□□□□ -0.39
TCF4-248ENST00000616053 CCSER1Q9C0I3 900 aa12.6□□□□□ -0.39
TCF4-248ENST00000616053 SLC5A7Q9GZV3 580 aa12.6□□□□□ -0.39
TCF4-248ENST00000616053 CDHR5Q9HBB8 845 aa12.6□□□□□ -0.39
TCF4-248ENST00000616053 CCDC167Q9P0B6 97 aa12.6□□□□□ -0.39
TCF4-248ENST00000616053 MEN1O00255 615 aa12.6□□□□□ -0.39
TCF4-248ENST00000616053 OGNP20774 298 aaKnown RBP12.6□□□□□ -0.39
TCF4-248ENST00000616053 CXCR1P25024 350 aa12.6□□□□□ -0.39
TCF4-248ENST00000616053 RPS9P46781 194 aaKnown RBP12.6□□□□□ -0.39
TCF4-248ENST00000616053 GNPDA1P46926 289 aa12.6□□□□□ -0.39
TCF4-248ENST00000616053 TTMPQ5BVD1 217 aa12.6□□□□□ -0.39
TCF4-248ENST00000616053 TCHHL1Q5QJ38 904 aaPredicted RBP12.6□□□□□ -0.39
TCF4-248ENST00000616053 ARPINQ7Z6K5 226 aa12.6□□□□□ -0.39
TCF4-248ENST00000616053 MSL3Q8N5Y2 521 aaKnown RBP12.6□□□□□ -0.39
TCF4-248ENST00000616053 PIH1D2Q8WWB5 315 aa12.6□□□□□ -0.39
TCF4-248ENST00000616053 KLK6Q92876 244 aa12.6□□□□□ -0.39
TCF4-248ENST00000616053 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.6□□□□□ -0.39
TCF4-248ENST00000616053 CENPMQ9NSP4 180 aa12.6□□□□□ -0.39
TCF4-248ENST00000616053 PADI2Q9Y2J8 665 aa12.6□□□□□ -0.39
TCF4-248ENST00000616053 SPIN1Q9Y657 262 aaPredicted RBP12.6□□□□□ -0.39
TCF4-248ENST00000616053 WDR97A6NE52 1622 aa12.6□□□□□ -0.39
TCF4-248ENST00000616053 PPEF2O14830 753 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 IRF6O14896 467 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 GNB3P16520 340 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 TIE1P35590 1138 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 ZNF572Q7Z3I7 529 aaPredicted RBP12.59□□□□□ -0.39
TCF4-248ENST00000616053 TBC1D10CQ8IV04 446 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 PANX1Q96RD7 426 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 OSGEPQ9NPF4 335 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 BTBD7Q9P203 1132 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 IRGMA1A4Y4 181 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 OR14I1A6ND48 311 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 TP73O15350 636 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 KCNJ1P48048 391 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 CD47Q08722 323 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 C11orf63Q6NUN7 778 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 FAM151BQ6UXP7 276 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 NKAPQ8N5F7 415 aaKnown RBP12.59□□□□□ -0.39
TCF4-248ENST00000616053 FAM46DQ8NEK8 389 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 OR5T2Q8NGG2 359 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 TIFAQ96CG3 184 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 OR10A4Q9H209 315 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 FBXO28Q9NVF7 368 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 TRAFD1O14545 582 aaPredicted RBP12.59□□□□□ -0.39
TCF4-248ENST00000616053 FPGSQ05932 587 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 RIC1Q4ADV7 1423 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 PRAMEF19Q5SWL8 479 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 TMC3Q7Z5M5 1100 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 STAG3L4Q8TBR4 150 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 FAM84BQ96KN1 310 aaPredicted RBP12.59□□□□□ -0.39
TCF4-248ENST00000616053 BRINP1O60477 761 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 REM1O75628 298 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 FARS2O95363 451 aaKnown RBP12.59□□□□□ -0.39
TCF4-248ENST00000616053 METTL18O95568 372 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 NR2F6P10588 404 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 SYN1P17600 705 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 SLC34A1Q06495 639 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 ZNF100Q8IYN0 542 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 PDPRQ8NCN5 879 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 ZSWIM2Q8NEG5 633 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 OR6N1Q8NGY5 312 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 LMX1AQ8TE12 382 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 XAGE5Q8WWM1 108 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 C3orf18Q9UK00 162 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 NRCAMQ92823 1304 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 SH2D7A6NKC9 451 aaPredicted RBP12.59□□□□□ -0.39
TCF4-248ENST00000616053 FGF10O15520 208 aaPredicted RBP12.59□□□□□ -0.39
TCF4-248ENST00000616053 EIF4EP06730 217 aaKnown RBP12.59□□□□□ -0.39
TCF4-248ENST00000616053 PPP3CAQ08209 521 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 CYP27C1Q4G0S4 372 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 PTCHD4Q6ZW05 846 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 REM2Q8IYK8 340 aaPredicted RBP12.59□□□□□ -0.39
TCF4-248ENST00000616053 COX18Q8N8Q8 333 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 REPS2Q8NFH8 660 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 OR6K2Q8NGY2 324 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 ERVK-5Q9HDB9 667 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 ARHGEF4Q9NR80 690 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 EIF2AK4Q9P2K8 1649 aaKnown RBP12.59□□□□□ -0.39
TCF4-248ENST00000616053 PRKCDQ05655 676 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 SPANXN3Q5MJ09 141 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 CYB5R4Q7L1T6 521 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 TCEANCQ8N8B7 351 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 DGAT2Q96PD7 388 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 OPA3Q9H6K4 179 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 CLOCKO15516 846 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 GJB1P08034 283 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 ACADSP16219 412 aa12.59□□□□□ -0.39
TCF4-248ENST00000616053 CLP1Q92989 425 aaKnown RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms