RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 TBATAQ96M53 351 aa16.42■□□□□ 0.22
CCDC28A-202ENST00000611852 VPS35Q96QK1 796 aa16.42■□□□□ 0.22
CCDC28A-202ENST00000611852 LRRC61Q9BV99 259 aa16.42■□□□□ 0.22
CCDC28A-202ENST00000611852 CYP4F12Q9HCS2 524 aa16.42■□□□□ 0.22
CCDC28A-202ENST00000611852 FKBPLQ9UIM3 349 aa16.42■□□□□ 0.22
CCDC28A-202ENST00000611852 CDC23Q9UJX2 597 aa16.42■□□□□ 0.22
CCDC28A-202ENST00000611852 TMPRSS11EQ9UL52 423 aa16.42■□□□□ 0.22
CCDC28A-202ENST00000611852 TMEM98Q9Y2Y6 226 aa16.42■□□□□ 0.22
CCDC28A-202ENST00000611852 OAS3Q9Y6K5 1087 aaKnown RBP16.42■□□□□ 0.22
CCDC28A-202ENST00000611852 ZNF106Q9H2Y7 1883 aaKnown RBP16.42■□□□□ 0.22
CCDC28A-202ENST00000611852 ARID1BQ8NFD5 2236 aaPredicted RBP16.42■□□□□ 0.22
CCDC28A-202ENST00000611852 CNOT1A5YKK6 2376 aaKnown RBP16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 AP3B1O00203 1094 aa16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 CBFA2T3O75081 653 aa16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 URI1O94763 535 aaPredicted RBP16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 TMEM63AO94886 807 aa16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 SLC25A14O95258 325 aaPredicted RBP16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 CSRP1P21291 193 aaKnown RBP16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 HADHAP40939 763 aa16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 GRK6P43250 576 aa16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 POLD2P49005 469 aa16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 PUM1Q14671 1186 aaKnown RBP eCLIP16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 LRRC8BQ6P9F7 803 aa16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 DOK6Q6PKX4 331 aa16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 SYDE1Q6ZW31 735 aaPredicted RBP16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 JAMLQ86YT9 394 aa16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 RHBDD1Q8TEB9 315 aa16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 STYXQ8WUJ0 223 aa16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 SCARF2Q96GP6 870 aaPredicted RBP16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 DNAJC1Q96KC8 554 aaKnown RBP16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 CAMK1GQ96NX5 476 aa16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 RANBP9Q96S59 729 aa16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 KRT12Q99456 494 aa16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 NLE1Q9NVX2 485 aaPredicted RBP16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 SPASTQ9UBP0 616 aa16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 ASIC3Q9UHC3 531 aa16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 MOSPD1Q9UJG1 213 aa16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 APPL1Q9UKG1 709 aa16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 PCOLCE2Q9UKZ9 415 aa16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 PCNX2A6NKB5 2137 aa16.41■□□□□ 0.22
CCDC28A-202ENST00000611852 DCHS1Q96JQ0 3298 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 HEATR9A2RTY3 570 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 DCDC2BA2VCK2 349 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 CCL22O00626 93 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 SCAMP1O15126 338 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 TTI1O43156 1089 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 GPR39O43194 453 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 AQP9O43315 295 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 UGT1A9O60656 530 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 PRAMEF1O95521 474 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 TNFP01375 233 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 GIMD1P0DJR0 217 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 UGT1A6P19224 532 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 UGT1A1P22309 533 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 UGT1A4P22310 534 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 ADRA1DP25100 572 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 PSMA3P25788 255 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 UGT1A3P35503 534 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 UGT1A5P35504 534 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 ADCY8P40145 1251 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 ID4P47928 161 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 SESN2P58004 480 aaPredicted RBP16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 TMPRSS15P98073 1019 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 XIAPP98170 497 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 ITGA9Q13797 1035 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 DHX34Q14147 1143 aaKnown RBP16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 INAVAQ3KP66 663 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 ZNF572Q7Z3I7 529 aaPredicted RBP16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 NAT8LQ8N9F0 302 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 DEFB124Q8NES8 71 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 LMX1AQ8TE12 382 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 CLPBQ9H078 707 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 CARS2Q9HA77 564 aaKnown RBP16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 UGT1A7Q9HAW7 530 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 UGT1A10Q9HAW8 530 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 UGT1A8Q9HAW9 530 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 ARFGAP3Q9NP61 516 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 VPS18Q9P253 973 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 SUFUQ9UMX1 484 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 CSNK1G3Q9Y6M4 447 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 NEMP2A6NFY4 417 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 H7C0S8 307 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 SRP72O76094 671 aaKnown RBP16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 ASMTLO95671 621 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 IVLP07476 585 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 CTSEP14091 401 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 IVDP26440 423 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 CA5AP35218 305 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 NPY2RP49146 381 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 SARNPP82979 210 aaKnown RBP16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 C2orf54Q08AI8 447 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 C1orf61Q13536 156 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 PEX6Q13608 980 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 LAMB3Q13751 1172 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 RNASEH2BQ5TBB1 312 aaKnown RBP16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 CAND1Q86VP6 1230 aaKnown RBP16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 PHYKPLQ8IUZ5 450 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 PPIL6Q8IXY8 311 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 EID2Q8N6I1 236 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 MCUQ8NE86 351 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms