RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	BTK	Q06187	659 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	ASPH	Q12797	758 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	NAA25	Q14CX7	972 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	HNRNPA1L2	Q32P51	320 aa	Known RBP	11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	ESRP1	Q6NXG1	681 aa	Known RBP	11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	SERPINA13P	Q6UXR4	307 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	GDPD4	Q6W3E5	623 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	ZCCHC23	Q6ZST2	131 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	RALGPS2	Q86X27	583 aa	Predicted RBP	11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	ULK2	Q8IYT8	1036 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	JADE3	Q92613	823 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	ECHDC3	Q96DC8	303 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	OSBPL1A	Q9BXW6	950 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	TMEM245	Q9H330	911 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	MAGEE1	Q9HCI5	957 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	FBRSL1	Q9HCM7	1045 aa	Known RBP	11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	TREX1	Q9NSU2	369 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	C20orf96	Q9NUD7	363 aa	Predicted RBP	11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	THAP10	Q9P2Z0	257 aa	Predicted RBP	11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	RIMKLB	Q9ULI2	386 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341		A0A096LPK6	155 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	CCDC78	A2IDD5	438 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	NPC1	O15118	1278 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	ITM2A	O43736	263 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	CCNT2	O60583	730 aa	Known RBP	11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	VAPB	O95292	243 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	UGT2B4	P06133	528 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	KIT	P10721	976 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	ALDH18A1	P54886	795 aa	Known RBP	11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	POLR2L	P62875	67 aa	Known RBP	11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	AP2B1	P63010	937 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	PFKP	Q01813	784 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	TAF1A	Q15573	450 aa	Predicted RBP	11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	CNGA3	Q16281	694 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	MUM1	Q2TAK8	710 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	KIAA0930	Q6ICG6	404 aa	Predicted RBP	11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	C16orf46	Q6P387	395 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	BRAT1	Q6PJG6	821 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	LRRC74B	Q6ZQY2	392 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	GLT6D1	Q7Z4J2	308 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	MYLK4	Q86YV6	388 aa	Predicted RBP	11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	SFTPA1	Q8IWL2	248 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	GPATCH11	Q8N954	259 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	GABPB2	Q8TAK5	448 aa	Predicted RBP	11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	GRIN3A	Q8TCU5	1115 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	ACTRT2	Q8TDY3	377 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	WDR60	Q8WVS4	1066 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	VOPP1	Q96AW1	172 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	VPS39	Q96JC1	886 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	CNDP1	Q96KN2	507 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	EBF4	Q9BQW3	602 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	CDH19	Q9H159	772 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	NMRAL1	Q9HBL8	299 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	OXSM	Q9NWU1	459 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	MARCO	Q9UEW3	520 aa	Predicted RBP	11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	SLC2A6	Q9UGQ3	507 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	SUN2	Q9UH99	717 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	IL36A	Q9UHA7	158 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	SPO11	Q9Y5K1	396 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	WASF2	Q9Y6W5	498 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341	PIAS3	Q9Y6X2	628 aa		11.65	□□□□□ -0.54
VRK3-223	ENST00000601341		A0A0J9YYE9	177 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341		G3V2L1	256 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	LEFTY1	O75610	366 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	SMNDC1	O75940	238 aa	Known RBP eCLIP	11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	TOP3B	O95985	862 aa	Known RBP	11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	TRBC1	P01850	177 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	PRNP	P04156	253 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	C2	P06681	752 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	ASGR2	P07307	311 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	HNRNPL	P14866	589 aa	Known RBP eCLIP	11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	GLUL	P15104	373 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	SERPINB5	P36952	375 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	ABL2	P42684	1182 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	HSP90AA5P	Q58FG0	334 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	ARSI	Q5FYB1	569 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	IRGC	Q6NXR0	463 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	EPGN	Q6UW88	154 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	KIRREL3	Q8IZU9	778 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	ZNF366	Q8N895	744 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	HCAR2	Q8TDS4	363 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	STYX	Q8WUJ0	223 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	TSNARE1	Q96NA8	513 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	ILKAP	Q9H0C8	392 aa	Predicted RBP	11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	MTG2	Q9H4K7	406 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	ZNF395	Q9H8N7	513 aa	Predicted RBP	11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	NMRK1	Q9NWW6	199 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	VTI1B	Q9UEU0	232 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	ARL5A	Q9Y689	179 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341		H0Y3Z8	333 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	SLC7A4	O43246	635 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	KRT36	O76013	467 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	HLA-E	P13747	358 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	CTPS1	P17812	591 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	LPO	P22079	712 aa	Predicted RBP	11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	IL12RB1	P42701	662 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	ARCN1	P48444	511 aa	Known RBP	11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	KPNA2	P52292	529 aa	Known RBP	11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	PRAME	P78395	509 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	ACVR1	Q04771	509 aa		11.64	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms