RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 ZNF653Q96CK0 615 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 MOCOSQ96EN8 888 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 SCRN2Q96FV2 425 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 AHCYL2Q96HN2 611 aaKnown RBP8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 DDA1Q9BW61 102 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 SPRY4Q9C004 299 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 CDH19Q9H159 772 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 HSD3B7Q9H2F3 369 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 ADNPQ9H2P0 1102 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 PARVAQ9NVD7 372 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 CNOT8Q9UFF9 292 aaKnown RBP8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 LIMA1Q9UHB6 759 aaKnown RBP8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 ZNHIT2Q9UHR6 403 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 PHTF1Q9UMS5 762 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 TP53TG5Q9Y2B4 290 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 TTLL3Q9Y4R7 772 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 SVILO95425 2214 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 PRR19A6NJB7 356 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 LRRC53A6NM62 1247 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 FADS2P1A8MWK0 482 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 B4E171 279 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 DNAJC6O75061 913 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 SOCS5O75159 536 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 RNF8O76064 485 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 CLDN7O95471 211 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 FTLP02792 175 aaPredicted RBP8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 TPM2P07951 284 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 CD48P09326 243 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 CYP2A6P11509 494 aaPredicted RBP8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 SKILP12757 684 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 TYRP1P17643 537 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 HTR7P34969 479 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 TSPAN7P41732 249 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 MMP13P45452 471 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 UQCRFS1P47985 274 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 RENBPP51606 427 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 SH3BP2P78314 561 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 MC2RQ01718 297 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 HHEXQ03014 270 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 TRA2AQ13595 282 aaKnown RBP eCLIP8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 NCAPHQ15003 741 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 PLA2G4EQ3MJ16 856 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 CHCHD2P9Q5T1J5 151 aaPredicted RBP8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 ARMC12Q5T9G4 340 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 ADAMTSL4Q6UY14 1074 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 USP45Q70EL2 814 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 ZNF571Q7Z3V5 609 aaPredicted RBP8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 ARHGAP22Q7Z5H3 698 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 SFRP1Q8N474 314 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 ATPAF2Q8N5M1 289 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 SCARF2Q96GP6 870 aaPredicted RBP8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 SLC45A3Q96JT2 553 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 CSPG4P5Q96PW8 444 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 MCCC1Q96RQ3 725 aaPredicted RBP8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 WDR24Q96S15 920 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 MGME1Q9BQP7 344 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 BRD8Q9H0E9 1235 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 HAUS4Q9H6D7 363 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 PRDM8Q9NQV8 689 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 DTLQ9NZJ0 730 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 CNOT6Q9ULM6 557 aaKnown RBP8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 CHKBQ9Y259 395 aa8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 ZNF106Q9H2Y7 1883 aaKnown RBP8.57□□□□□ -1.04
SHKBP1-220ENST00000599716 H3BRJ5 948 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 DDX3XO00571 662 aaKnown RBP eCLIP8.56□□□□□ -1.045e-8■■■■■ 77.1
SHKBP1-220ENST00000599716 MFSD11O43934 449 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 FZD6O60353 706 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 DNAJB5O75953 348 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 AGFG2O95081 481 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 SLC4A1P02730 911 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 PDGFAP04085 211 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 KRT7P08729 469 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 RARAP10276 462 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 FERP16591 822 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 TCN2P20062 427 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 CDK11BP21127 795 aaKnown RBP8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 GJC1P36383 396 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 DCTP40126 519 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 FASLGP48023 281 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 LEPRP48357 1165 aaKnown RBP8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 SEPHS1P49903 392 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 FOXM1Q08050 763 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 ERV3-1Q14264 604 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 SEPT7Q16181 437 aaKnown RBP8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 ATP13A4Q4VNC1 1196 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 MARC1Q5VT66 337 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 TMCO3Q6UWJ1 677 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 POLNQ7Z5Q5 900 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 SRRM1Q8IYB3 904 aaKnown RBP8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 GALNT6Q8NCL4 622 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 CCDC112Q8NEF3 446 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 LPCAT1Q8NF37 534 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 OR10G6Q8NH81 332 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 COX14Q96I36 57 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 ZNF599Q96NL3 588 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 ERGIC2Q96RQ1 377 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 RUFY1Q96T51 708 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 ASPSCR1Q9BZE9 553 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 B3GNT4Q9C0J1 378 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms