RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 SNX20Q7Z614 316 aa16.44■□□□□ 0.22
SHKBP1-219ENST00000599575 MINDY1Q8N5J2 469 aa16.44■□□□□ 0.22
SHKBP1-219ENST00000599575 ZNF398Q8TD17 642 aa16.44■□□□□ 0.22
SHKBP1-219ENST00000599575 SEC14L1Q92503 715 aa16.44■□□□□ 0.22
SHKBP1-219ENST00000599575 TCEAL3Q969E4 200 aa16.44■□□□□ 0.22
SHKBP1-219ENST00000599575 SCARF2Q96GP6 870 aaPredicted RBP16.44■□□□□ 0.22
SHKBP1-219ENST00000599575 CDKN2AIPNLQ96HQ2 116 aa16.44■□□□□ 0.22
SHKBP1-219ENST00000599575 GTPBP2Q9BX10 602 aaKnown RBP16.44■□□□□ 0.22
SHKBP1-219ENST00000599575 FOXP3Q9BZS1 431 aa16.44■□□□□ 0.22
SHKBP1-219ENST00000599575 SMOC1Q9H4F8 434 aa16.44■□□□□ 0.22
SHKBP1-219ENST00000599575 TRIM39Q9HCM9 518 aa16.44■□□□□ 0.22
SHKBP1-219ENST00000599575 PIH1D1Q9NWS0 290 aaKnown RBP16.44■□□□□ 0.22
SHKBP1-219ENST00000599575 CNOT6Q9ULM6 557 aaKnown RBP16.44■□□□□ 0.22
SHKBP1-219ENST00000599575 SOX13Q9UN79 622 aa16.44■□□□□ 0.22
SHKBP1-219ENST00000599575 SLC30A1Q9Y6M5 507 aa16.44■□□□□ 0.22
SHKBP1-219ENST00000599575 FAM186AA6NE01 2351 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 FAM237BA0A1B0GVD1 139 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 GOLGA8CPA6NN73 597 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 FADS2P1A8MWK0 482 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 SLC25A14O95258 325 aaPredicted RBP16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 TTC4O95801 387 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 IVLP07476 585 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 PAMP19021 973 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 PPARGP37231 505 aaPredicted RBP16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 RPL21P46778 160 aaKnown RBP16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 HK3P52790 923 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 ITGA8P53708 1063 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 ARL4CP56559 192 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 XIAPP98170 497 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 PEX6Q13608 980 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 INAVAQ3KP66 663 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 ATP13A5Q4VNC0 1218 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 ALS2CLQ60I27 953 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 ENPP7Q6UWV6 458 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 LAYNQ6UX15 382 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 FAM151BQ6UXP7 276 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 CERS6Q6ZMG9 384 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 PELI3Q8N2H9 469 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 DDHD1Q8NEL9 900 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 OR13C4Q8NGS5 318 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 NETO1Q8TDF5 533 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 ZNF514Q96K75 400 aaPredicted RBP16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 DNAJC1Q96KC8 554 aaKnown RBP16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 AGAP2Q99490 1192 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 TTC1Q99614 292 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 SLC13A1Q9BZW2 595 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 CHRAC1Q9NRG0 131 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 KLQ9UEF7 1012 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 FKBPLQ9UIM3 349 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 SNX24Q9Y343 169 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 KCTD3Q9Y597 815 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 CSNK1G3Q9Y6M4 447 aa16.43■□□□□ 0.22
SHKBP1-219ENST00000599575 PLXNA2O75051 1894 aa16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 KLHL33A6NCF5 533 aa16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 NEMP2A6NFY4 417 aa16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 GAPDHSO14556 408 aaPredicted RBP16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 CDX4O14627 284 aaPredicted RBP16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 BUD23O43709 281 aaKnown RBP16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 CEACAM5P06731 702 aa16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 MGAT1P26572 445 aa16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 SRP54P61011 504 aaKnown RBP16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 PRAMEP78395 509 aa16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 CACNG1Q06432 222 aa16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 LRP8Q14114 963 aa16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 CHRNA6Q15825 494 aa16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 HIF1AQ16665 826 aa16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 CCDC38Q502W7 563 aa16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 AARS2Q5JTZ9 985 aaKnown RBP16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 LYPLAL1Q5VWZ2 237 aa16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 AFTPHQ6ULP2 937 aa16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 DBX2Q6ZNG2 339 aa16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 TMEM135Q86UB9 458 aa16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 FSTL5Q8N475 847 aaPredicted RBP16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 OR13J1Q8NGT2 312 aa16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 SCG3Q8WXD2 468 aaKnown RBP16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 SIGLEC10Q96LC7 697 aa16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 LRRC1Q9BTT6 524 aa16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 LGR4Q9BXB1 951 aa16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 TRIM31Q9BZY9 425 aa16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 TSPYL1Q9H0U9 437 aa16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 ASB8Q9H765 288 aa16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 TM7SF3Q9NS93 570 aa16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 TREX1Q9NSU2 369 aa16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 TRNAU1APQ9NX07 287 aaKnown RBP16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 DNAJC28Q9NX36 388 aa16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 SPASTQ9UBP0 616 aa16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 LAMA1P25391 3075 aa16.42■□□□□ 0.22
SHKBP1-219ENST00000599575 PCDH15Q96QU1 1955 aa16.41■□□□□ 0.22
SHKBP1-219ENST00000599575 TRBV5-4A0A0C4DH59 114 aa16.41■□□□□ 0.22
SHKBP1-219ENST00000599575 PRSS38A1L453 326 aa16.41■□□□□ 0.22
SHKBP1-219ENST00000599575 TMEM202A6NGA9 273 aa16.41■□□□□ 0.22
SHKBP1-219ENST00000599575 GOLGA8MH3BSY2 632 aa16.41■□□□□ 0.22
SHKBP1-219ENST00000599575 TP73O15350 636 aa16.41■□□□□ 0.22
SHKBP1-219ENST00000599575 EIF3HO15372 352 aaKnown RBP eCLIP16.41■□□□□ 0.22
SHKBP1-219ENST00000599575 AVILO75366 819 aa16.41■□□□□ 0.22
SHKBP1-219ENST00000599575 USP1O94782 785 aa16.41■□□□□ 0.22
SHKBP1-219ENST00000599575 TNFP01375 233 aa16.41■□□□□ 0.22
SHKBP1-219ENST00000599575 POLBP06746 335 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms