RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 RPIAP49247 311 aa14.91□□□□□ -0.02
UPF1-202ENST00000594243 DNAJC3Q13217 504 aa14.91□□□□□ -0.02
UPF1-202ENST00000594243 MSLNQ13421 630 aaPredicted RBP14.91□□□□□ -0.02
UPF1-202ENST00000594243 SEMA5AQ13591 1074 aa14.91□□□□□ -0.02
UPF1-202ENST00000594243 PEX6Q13608 980 aa14.91□□□□□ -0.02
UPF1-202ENST00000594243 ITGA9Q13797 1035 aa14.91□□□□□ -0.02
UPF1-202ENST00000594243 C6orf132Q5T0Z8 1188 aa14.91□□□□□ -0.02
UPF1-202ENST00000594243 KCTD16Q68DU8 428 aa14.91□□□□□ -0.02
UPF1-202ENST00000594243 NYAP1Q6ZVC0 841 aa14.91□□□□□ -0.02
UPF1-202ENST00000594243 TAF8Q7Z7C8 310 aa14.91□□□□□ -0.02
UPF1-202ENST00000594243 DNAAF3Q8N9W5 541 aa14.91□□□□□ -0.02
UPF1-202ENST00000594243 COG1Q8WTW3 980 aa14.91□□□□□ -0.02
UPF1-202ENST00000594243 ADAMTS14Q8WXS8 1223 aa14.91□□□□□ -0.02
UPF1-202ENST00000594243 GLYATL1Q969I3 302 aa14.91□□□□□ -0.02
UPF1-202ENST00000594243 VPS35Q96QK1 796 aa14.91□□□□□ -0.02
UPF1-202ENST00000594243 BOCQ9BWV1 1114 aa14.91□□□□□ -0.02
UPF1-202ENST00000594243 AP1M1Q9BXS5 423 aa14.91□□□□□ -0.02
UPF1-202ENST00000594243 GSDMCQ9BYG8 508 aa14.91□□□□□ -0.02
UPF1-202ENST00000594243 TRIM39Q9HCM9 518 aa14.91□□□□□ -0.02
UPF1-202ENST00000594243 IL26Q9NPH9 171 aa14.91□□□□□ -0.02
UPF1-202ENST00000594243 APPL1Q9UKG1 709 aa14.91□□□□□ -0.02
UPF1-202ENST00000594243 GPSM3Q9Y4H4 160 aa14.91□□□□□ -0.02
UPF1-202ENST00000594243 ARL5AQ9Y689 179 aa14.91□□□□□ -0.02
UPF1-202ENST00000594243 GOLGA6L10A0A0M3HER8 536 aa14.9□□□□□ -0.02
UPF1-202ENST00000594243 GLYATL1P3A0A0U1RQE8 302 aa14.9□□□□□ -0.02
UPF1-202ENST00000594243 GPR89AB7ZAQ6 455 aa14.9□□□□□ -0.02
UPF1-202ENST00000594243 BUD23O43709 281 aaKnown RBP14.9□□□□□ -0.02
UPF1-202ENST00000594243 SUN1O94901 812 aa14.9□□□□□ -0.02
UPF1-202ENST00000594243 DKK1O94907 266 aa14.9□□□□□ -0.02
UPF1-202ENST00000594243 ZSCAN5DPP0CG00 497 aa14.9□□□□□ -0.02
UPF1-202ENST00000594243 GPR89BP0CG08 455 aa14.9□□□□□ -0.02
UPF1-202ENST00000594243 PMLP29590 882 aa14.9□□□□□ -0.02
UPF1-202ENST00000594243 HADHAP40939 763 aa14.9□□□□□ -0.02
UPF1-202ENST00000594243 CDH17Q12864 832 aa14.9□□□□□ -0.02
UPF1-202ENST00000594243 ILF3Q12906 894 aaKnown RBP eCLIP14.9□□□□□ -0.02
UPF1-202ENST00000594243 FOXC1Q12948 553 aa14.9□□□□□ -0.02
UPF1-202ENST00000594243 CYP1B1Q16678 543 aa14.9□□□□□ -0.02
UPF1-202ENST00000594243 PAPD7Q5XG87 772 aaKnown RBP14.9□□□□□ -0.02
UPF1-202ENST00000594243 PPP1R21Q6ZMI0 780 aa14.9□□□□□ -0.02
UPF1-202ENST00000594243 PRUNE1Q86TP1 453 aa14.9□□□□□ -0.02
UPF1-202ENST00000594243 TRIM74Q86UV6 250 aa14.9□□□□□ -0.02
UPF1-202ENST00000594243 PHYKPLQ8IUZ5 450 aa14.9□□□□□ -0.02
UPF1-202ENST00000594243 PNPLA1Q8N8W4 532 aa14.9□□□□□ -0.02
UPF1-202ENST00000594243 GLIS1Q8NBF1 620 aa14.9□□□□□ -0.02
UPF1-202ENST00000594243 OR4K2Q8NGD2 314 aa14.9□□□□□ -0.02
UPF1-202ENST00000594243 GPBAR1Q8TDU6 330 aa14.9□□□□□ -0.02
UPF1-202ENST00000594243 NAPGQ99747 312 aaPredicted RBP14.9□□□□□ -0.02
UPF1-202ENST00000594243 EPG5Q9HCE0 2579 aa14.9□□□□□ -0.02
UPF1-202ENST00000594243 ASCC3Q8N3C0 2202 aaKnown RBP14.9□□□□□ -0.02
UPF1-202ENST00000594243 CTAGE9A4FU28 777 aa14.89□□□□□ -0.03
UPF1-202ENST00000594243 AP3B1O00203 1094 aa14.89□□□□□ -0.03
UPF1-202ENST00000594243 ZNF185O15231 689 aa14.89□□□□□ -0.03
UPF1-202ENST00000594243 VEGFDO43915 354 aa14.89□□□□□ -0.03
UPF1-202ENST00000594243 RFPL3O75679 317 aa14.89□□□□□ -0.03
UPF1-202ENST00000594243 APRTP07741 180 aa14.89□□□□□ -0.03
UPF1-202ENST00000594243 CELA2BP08218 269 aaPredicted RBP14.89□□□□□ -0.03
UPF1-202ENST00000594243 TPH1P17752 444 aa14.89□□□□□ -0.03
UPF1-202ENST00000594243 COILP38432 576 aaPredicted RBP14.89□□□□□ -0.03
UPF1-202ENST00000594243 ADCY8P40145 1251 aa14.89□□□□□ -0.03
UPF1-202ENST00000594243 ACADVLP49748 655 aa14.89□□□□□ -0.03
UPF1-202ENST00000594243 E2F1Q01094 437 aa14.89□□□□□ -0.03
UPF1-202ENST00000594243 LAMB3Q13751 1172 aa14.89□□□□□ -0.03
UPF1-202ENST00000594243 LRP8Q14114 963 aa14.89□□□□□ -0.03
UPF1-202ENST00000594243 NR0B2Q15466 257 aa14.89□□□□□ -0.03
UPF1-202ENST00000594243 ATP13A5Q4VNC0 1218 aa14.89□□□□□ -0.03
UPF1-202ENST00000594243 PYCR3Q53H96 274 aa14.89□□□□□ -0.03
UPF1-202ENST00000594243 CCDC157Q569K6 752 aa14.89□□□□□ -0.03
UPF1-202ENST00000594243 CCDC137Q6PK04 289 aaKnown RBP14.89□□□□□ -0.03
UPF1-202ENST00000594243 MARK2Q7KZI7 788 aaKnown RBP14.89□□□□□ -0.03
UPF1-202ENST00000594243 RAB44Q7Z6P3 723 aaPredicted RBP14.89□□□□□ -0.03
UPF1-202ENST00000594243 GALNT13Q8IUC8 556 aa14.89□□□□□ -0.03
UPF1-202ENST00000594243 FAM46DQ8NEK8 389 aa14.89□□□□□ -0.03
UPF1-202ENST00000594243 OR2M4Q96R27 311 aa14.89□□□□□ -0.03
UPF1-202ENST00000594243 DPEP2Q9H4A9 486 aa14.89□□□□□ -0.03
UPF1-202ENST00000594243 SUDS3Q9H7L9 328 aaPredicted RBP14.89□□□□□ -0.03
UPF1-202ENST00000594243 ZNHIT2Q9UHR6 403 aa14.89□□□□□ -0.03
UPF1-202ENST00000594243 GPR34Q9UPC5 381 aa14.89□□□□□ -0.03
UPF1-202ENST00000594243 SAR1BQ9Y6B6 198 aa14.89□□□□□ -0.03
UPF1-202ENST00000594243 OAS3Q9Y6K5 1087 aaKnown RBP14.89□□□□□ -0.03
UPF1-202ENST00000594243 ACACBO00763 2458 aa14.89□□□□□ -0.03
UPF1-202ENST00000594243 EME2A4GXA9 379 aaPredicted RBP14.88□□□□□ -0.03
UPF1-202ENST00000594243 LDB2O43679 373 aa14.88□□□□□ -0.03
UPF1-202ENST00000594243 NUAK1O60285 661 aa14.88□□□□□ -0.03
UPF1-202ENST00000594243 DNAJC6O75061 913 aa14.88□□□□□ -0.03
UPF1-202ENST00000594243 PHF2O75151 1096 aa14.88□□□□□ -0.03
UPF1-202ENST00000594243 GP1BAP07359 652 aa14.88□□□□□ -0.03
UPF1-202ENST00000594243 BASP1P80723 227 aaKnown RBP14.88□□□□□ -0.03
UPF1-202ENST00000594243 CTBSQ01459 385 aa14.88□□□□□ -0.03
UPF1-202ENST00000594243 PTPRCAPQ14761 206 aa14.88□□□□□ -0.03
UPF1-202ENST00000594243 TCEA2Q15560 299 aa14.88□□□□□ -0.03
UPF1-202ENST00000594243 CHRNA6Q15825 494 aa14.88□□□□□ -0.03
UPF1-202ENST00000594243 OGFOD3Q6PK18 319 aa14.88□□□□□ -0.03
UPF1-202ENST00000594243 FAM151BQ6UXP7 276 aa14.88□□□□□ -0.03
UPF1-202ENST00000594243 CHCHD4Q8N4Q1 142 aa14.88□□□□□ -0.03
UPF1-202ENST00000594243 ARL10Q8N8L6 244 aa14.88□□□□□ -0.03
UPF1-202ENST00000594243 OR6C4Q8NGE1 309 aa14.88□□□□□ -0.03
UPF1-202ENST00000594243 OR52K1Q8NGK4 314 aa14.88□□□□□ -0.03
UPF1-202ENST00000594243 CCL4L1Q8NHW4 92 aa14.88□□□□□ -0.03
UPF1-202ENST00000594243 GDAP1Q8TB36 358 aa14.88□□□□□ -0.03
UPF1-202ENST00000594243 ZNF398Q8TD17 642 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms