RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	TRIM13	O60858	407 aa		11.58	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	DAB1	O75553	588 aa		11.58	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	CLPTM1	O96005	669 aa		11.58	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	OR4Q2	P0C623	313 aa		11.58	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	RPS2	P15880	293 aa	Known RBP	11.58	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	TFEB	P19484	476 aa		11.58	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	DIO1	P49895	249 aa		11.58	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	HECTD3	Q5T447	861 aa		11.58	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	TIFAB	Q6ZNK6	161 aa		11.58	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	RFPL4B	Q6ZWI9	263 aa		11.58	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	RTN4RL1	Q86UN2	441 aa	Predicted RBP	11.58	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	KCNMB4	Q86W47	210 aa		11.58	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	CLVS1	Q8IUQ0	354 aa	Predicted RBP	11.58	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	POF1B	Q8WVV4	589 aa		11.58	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	VPS39	Q96JC1	886 aa		11.58	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	RBBP8	Q99708	897 aa		11.58	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	TSEN34	Q9BSV6	310 aa	Known RBP	11.58	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	ACE2	Q9BYF1	805 aa	Predicted RBP	11.58	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	FRMD8	Q9BZ67	464 aa	Predicted RBP	11.58	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	CRISPLD2	Q9H0B8	497 aa		11.58	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	DMAP1	Q9NPF5	467 aa	Predicted RBP	11.58	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	DNAJC28	Q9NX36	388 aa		11.58	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	GTSE1	Q9NYZ3	720 aa		11.58	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	GIT1	Q9Y2X7	761 aa		11.58	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	PCDHB12	Q9Y5F1	795 aa		11.58	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	NOTO	A8MTQ0	251 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	NT5C1B-RDH14	C9J2C7	533 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	AURKA	O14965	403 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	TFAP2A	P05549	437 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	SMIM18	P0DKX4	95 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	SELL	P14151	372 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	CTRB1	P17538	263 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	GDI1	P31150	447 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	ADRA1B	P35368	520 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	RPL34	P49207	117 aa	Known RBP	11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	GATM	P50440	423 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	TPI1	P60174	286 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	USP46	P62068	366 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	ART3	Q13508	389 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	TBCC	Q15814	346 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	XKR4	Q5GH76	650 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	CTRB2	Q6GPI1	263 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	IGF2-AS	Q6U949	168 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	GLB1L	Q6UWU2	654 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	ABI1	Q8IZP0	508 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	ANKRD53	Q8N9V6	530 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	DBF4B	Q8NFT6	615 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	KCTD13	Q8WZ19	329 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	COL26A1	Q96A83	441 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	HIC2	Q96JB3	615 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	RPL10L	Q96L21	214 aa	Known RBP	11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	HSFY1	Q96LI6	401 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	AIFM2	Q9BRQ8	373 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	ASPSCR1	Q9BZE9	553 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	FAM192A	Q9GZU8	254 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	TRPM5	Q9NZQ8	1165 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	HCST	Q9UBK5	93 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	FBXL21	Q9UKT6	434 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	BAG5	Q9UL15	447 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	ZCWPW2	A0A1B0GU75	182 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	KCNU1	A8MYU2	1149 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063		H3BSA7	217 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	SPR	P35270	261 aa	Predicted RBP	11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	GARS	P41250	739 aa	Known RBP	11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	CD97	P48960	835 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	HARS2	P49590	506 aa	Known RBP	11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	CYLC2	Q14093	348 aa	Predicted RBP	11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	PTK2B	Q14289	1009 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	PPP1R3A	Q16821	1122 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	UPP1	Q16831	310 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	AAGAB	Q6PD74	315 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	KY	Q8NBH2	561 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	SCAMP5	Q8TAC9	235 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	DIS3L	Q8TF46	1054 aa	Known RBP	11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	NXNL1	Q96CM4	212 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	FAM193B	Q96PV7	902 aa	Predicted RBP	11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	ILKAP	Q9H0C8	392 aa	Predicted RBP	11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	BFAR	Q9NZS9	450 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	SLC2A6	Q9UGQ3	507 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	CDY1	Q9Y6F8	540 aa		11.57	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	TTC24	A2A3L6	582 aa	Predicted RBP	11.56	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	MSI1	O43347	362 aa	Known RBP	11.56	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	SULT1B1	O43704	296 aa		11.56	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	CABYR	O75952	493 aa		11.56	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	KCNH1	O95259	989 aa		11.56	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	TFPT	P0C1Z6	253 aa		11.56	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	ADH7	P40394	386 aa		11.56	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	CDH15	P55291	814 aa		11.56	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	RPP30	P78346	268 aa	Known RBP	11.56	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	MYBPC1	Q00872	1141 aa		11.56	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	HSPA14	Q0VDF9	509 aa		11.56	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	HNRNPD	Q14103	355 aa	Known RBP	11.56	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	MYLK3	Q32MK0	819 aa		11.56	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	FBXO48	Q5FWF7	155 aa		11.56	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	IL23R	Q5VWK5	629 aa		11.56	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	SEL1L3	Q68CR1	1132 aa		11.56	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	KLHDC10	Q6PID8	442 aa		11.56	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	FAM35A	Q86V20	835 aa		11.56	□□□□□ -0.56
CDK5RAP3-231	ENST00000584063	SLC38A6	Q8IZM9	456 aa		11.56	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms