RNA–Protein interactions for RNA: ENST00000581631.1

SMCHD1-206, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 729 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-206ENST00000581631 CMKLR1Q99788 373 aa3.2□□□□□ -1.9
SMCHD1-206ENST00000581631 FAM110AQ9BQ89 295 aa3.2□□□□□ -1.9
SMCHD1-206ENST00000581631 MMP25Q9NPA2 562 aa3.2□□□□□ -1.9
SMCHD1-206ENST00000581631 WASH6PQ9NQA3 447 aa3.2□□□□□ -1.9
SMCHD1-206ENST00000581631 SLC7A10Q9NS82 523 aa3.2□□□□□ -1.9
SMCHD1-206ENST00000581631 SLC6A13Q9NSD5 602 aa3.2□□□□□ -1.9
SMCHD1-206ENST00000581631 PAK5Q9P286 719 aa3.2□□□□□ -1.9
SMCHD1-206ENST00000581631 ERVK-11Q9UQG0 969 aa3.2□□□□□ -1.9
SMCHD1-206ENST00000581631 CAMK2AQ9UQM7 478 aa3.2□□□□□ -1.9
SMCHD1-206ENST00000581631 AAR2Q9Y312 384 aaKnown RBP3.2□□□□□ -1.9
SMCHD1-206ENST00000581631 CYP46A1Q9Y6A2 500 aa3.2□□□□□ -1.9
SMCHD1-206ENST00000581631 CTAGE9A4FU28 777 aa3.19□□□□□ -1.9
SMCHD1-206ENST00000581631 TTC36A6NLP5 189 aa3.19□□□□□ -1.9
SMCHD1-206ENST00000581631 LRRC53A6NM62 1247 aa3.19□□□□□ -1.9
SMCHD1-206ENST00000581631 AKR1B15C9JRZ8 316 aaPredicted RBP3.19□□□□□ -1.9
SMCHD1-206ENST00000581631 USP17L23D6RBM5 183 aa3.19□□□□□ -1.9
SMCHD1-206ENST00000581631 CTAGE8P0CG41 777 aa3.19□□□□□ -1.9
SMCHD1-206ENST00000581631 DDX5P17844 614 aaKnown RBP3.19□□□□□ -1.9
SMCHD1-206ENST00000581631 RAD23BP54727 409 aa3.19□□□□□ -1.9
SMCHD1-206ENST00000581631 HNRNPH2P55795 449 aaKnown RBP3.19□□□□□ -1.9
SMCHD1-206ENST00000581631 TMEM95Q3KNT9 176 aa3.19□□□□□ -1.9
SMCHD1-206ENST00000581631 GPATCH4Q5T3I0 446 aaKnown RBP3.19□□□□□ -1.9
SMCHD1-206ENST00000581631 CTAGE4Q8IX94 777 aa3.19□□□□□ -1.9
SMCHD1-206ENST00000581631 CCDC13Q8IYE1 715 aa3.19□□□□□ -1.9
SMCHD1-206ENST00000581631 NFKBIDQ8NI38 313 aa3.19□□□□□ -1.9
SMCHD1-206ENST00000581631 SH3GL2Q99962 352 aa3.19□□□□□ -1.9
SMCHD1-206ENST00000581631 PAIP1Q9H074 479 aaKnown RBP3.19□□□□□ -1.9
SMCHD1-206ENST00000581631 PCDHB16Q9NRJ7 776 aa3.19□□□□□ -1.9
SMCHD1-206ENST00000581631 ZNF624Q9P2J8 865 aaPredicted RBP3.19□□□□□ -1.9
SMCHD1-206ENST00000581631 GJD2Q9UKL4 321 aa3.19□□□□□ -1.9
SMCHD1-206ENST00000581631 MKLN1Q9UL63 735 aa3.19□□□□□ -1.9
SMCHD1-206ENST00000581631 PADI1Q9ULC6 663 aa3.19□□□□□ -1.9
SMCHD1-206ENST00000581631 NAALADL1Q9UQQ1 740 aa3.19□□□□□ -1.9
SMCHD1-206ENST00000581631 CRYL1Q9Y2S2 319 aa3.19□□□□□ -1.9
SMCHD1-206ENST00000581631 AMDHD2Q9Y303 409 aa3.19□□□□□ -1.9
SMCHD1-206ENST00000581631 CEPT1Q9Y6K0 416 aa3.19□□□□□ -1.9
SMCHD1-206ENST00000581631 VCYO14598 125 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 PCDH7O60245 1069 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 EIF3JO75822 258 aaKnown RBP3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 MYOD1P15172 320 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 IL7RP16871 459 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 RRM1P23921 792 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 CORO1AP31146 461 aaKnown RBP3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 CDAP32320 146 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 CPOXP36551 454 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 GNL1P36915 607 aaPredicted RBP3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 HARS2P49590 506 aaKnown RBP3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 DRG2P55039 364 aaKnown RBP3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 IRX1P78414 480 aaPredicted RBP3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 DRAP1Q14919 205 aaPredicted RBP3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 GSTA3Q16772 222 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 KRT24Q2M2I5 525 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 CCDC96Q2M329 555 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 ZNF280DQ6N043 979 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 TRNP1Q6NT89 227 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 DUS1LQ6P1R4 473 aaKnown RBP3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 PQLC2Q6ZP29 291 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 KCTD8Q6ZWB6 473 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 CNTROBQ8N137 903 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 HMGCLL1Q8TB92 370 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 GTF3C6Q969F1 213 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 ORAI1Q96D31 301 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 SAAL1Q96ER3 474 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 RRP36Q96EU6 259 aaKnown RBP3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 LRR1Q96L50 414 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 PCYT2Q99447 389 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 MTERF1Q99551 399 aaKnown RBP3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 AGXT2Q9BYV1 514 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 IFIH1Q9BYX4 1025 aaKnown RBP3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 USP44Q9H0E7 712 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 KIF9Q9HAQ2 790 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 FAM118AQ9NWS6 357 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 SLC13A4Q9UKG4 626 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 INTS6Q9UL03 887 aaKnown RBP3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 DLGAP4Q9Y2H0 992 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 LOXL2Q9Y4K0 774 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 UTYO14607 1347 aa3.18□□□□□ -1.9
SMCHD1-206ENST00000581631 A0A087X002 238 aa3.17□□□□□ -1.9
SMCHD1-206ENST00000581631 IGKV6D-41A0A0C4DH26 115 aa3.17□□□□□ -1.9
SMCHD1-206ENST00000581631 GOLGA6L9A6NEM1 432 aa3.17□□□□□ -1.9
SMCHD1-206ENST00000581631 A6NLC8 198 aa3.17□□□□□ -1.9
SMCHD1-206ENST00000581631 EGFP01133 1207 aa3.17□□□□□ -1.9
SMCHD1-206ENST00000581631 HOXB5P09067 269 aa3.17□□□□□ -1.9
SMCHD1-206ENST00000581631 EPHA8P29322 1005 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-206ENST00000581631 ARL1P40616 181 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-206ENST00000581631 HOXA1P49639 335 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-206ENST00000581631 CSRP3P50461 194 aa3.17□□□□□ -1.9
SMCHD1-206ENST00000581631 ISL1P61371 349 aa3.17□□□□□ -1.9
SMCHD1-206ENST00000581631 PDE1BQ01064 536 aa3.17□□□□□ -1.9
SMCHD1-206ENST00000581631 ZNF239Q16600 458 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-206ENST00000581631 USP41Q3LFD5 358 aa3.17□□□□□ -1.9
SMCHD1-206ENST00000581631 C6orf141Q5SZD1 244 aa3.17□□□□□ -1.9
SMCHD1-206ENST00000581631 FAM53AQ6NSI3 398 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-206ENST00000581631 RNF113BQ8IZP6 322 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-206ENST00000581631 PCDH20Q8N6Y1 951 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-206ENST00000581631 ZUFSPQ96AP4 578 aa3.17□□□□□ -1.9
SMCHD1-206ENST00000581631 ZNF689Q96CS4 500 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-206ENST00000581631 GRAMD2BQ96HH9 432 aa3.17□□□□□ -1.9
SMCHD1-206ENST00000581631 NR1H4Q96RI1 486 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-206ENST00000581631 EIF2AK1Q9BQI3 630 aaKnown RBP3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms