RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 ZZEF1O43149 2961 aa23.72■■□□□ 1.39
SHMT1-206ENST00000579558 COL27A1Q8IZC6 1860 aaPredicted RBP23.71■■□□□ 1.39
SHMT1-206ENST00000579558 GOLGA6L9A6NEM1 432 aa23.71■■□□□ 1.39
SHMT1-206ENST00000579558 AURKAO14965 403 aa23.71■■□□□ 1.39
SHMT1-206ENST00000579558 CASC3O15234 703 aaKnown RBP23.71■■□□□ 1.39
SHMT1-206ENST00000579558 KRT86O43790 486 aa23.71■■□□□ 1.39
SHMT1-206ENST00000579558 TCEA3O75764 348 aa23.71■■□□□ 1.39
SHMT1-206ENST00000579558 GLB1P16278 677 aa23.71■■□□□ 1.39
SHMT1-206ENST00000579558 GEMP55040 296 aa23.71■■□□□ 1.39
SHMT1-206ENST00000579558 SPIDRQ14159 915 aa23.71■■□□□ 1.39
SHMT1-206ENST00000579558 HLTFQ14527 1009 aaKnown RBP eCLIP23.71■■□□□ 1.39
SHMT1-206ENST00000579558 ISXQ2M1V0 245 aa23.71■■□□□ 1.39
SHMT1-206ENST00000579558 ZNF569Q5MCW4 686 aa23.71■■□□□ 1.39
SHMT1-206ENST00000579558 ZDHHC1Q8WTX9 485 aa23.71■■□□□ 1.39
SHMT1-206ENST00000579558 HES6Q96HZ4 224 aa23.71■■□□□ 1.39
SHMT1-206ENST00000579558 ZSCAN5AQ9BUG6 496 aa23.71■■□□□ 1.39
SHMT1-206ENST00000579558 FSD1LQ9BXM9 530 aa23.71■■□□□ 1.39
SHMT1-206ENST00000579558 NFKBIL1Q9UBC1 381 aaPredicted RBP23.71■■□□□ 1.39
SHMT1-206ENST00000579558 PLEKHM1Q9Y4G2 1056 aa23.71■■□□□ 1.39
SHMT1-206ENST00000579558 ST14Q9Y5Y6 855 aa23.71■■□□□ 1.39
SHMT1-206ENST00000579558 ANXA9O76027 345 aa23.7■■□□□ 1.38
SHMT1-206ENST00000579558 FGF1P05230 155 aa23.7■■□□□ 1.38
SHMT1-206ENST00000579558 HLA-DPA1P20036 260 aa23.7■■□□□ 1.38
SHMT1-206ENST00000579558 ACTR1BP42025 376 aa23.7■■□□□ 1.38
SHMT1-206ENST00000579558 ACTR1AP61163 376 aa23.7■■□□□ 1.38
SHMT1-206ENST00000579558 PEX6Q13608 980 aa23.7■■□□□ 1.38
SHMT1-206ENST00000579558 SLC1A5Q15758 541 aa23.7■■□□□ 1.38
SHMT1-206ENST00000579558 ANKRD20A2Q5SQ80 823 aa23.7■■□□□ 1.38
SHMT1-206ENST00000579558 CERCAMQ5T4B2 595 aa23.7■■□□□ 1.38
SHMT1-206ENST00000579558 ANKRD20A1Q5TYW2 823 aa23.7■■□□□ 1.38
SHMT1-206ENST00000579558 ANKRD20A3Q5VUR7 823 aa23.7■■□□□ 1.38
SHMT1-206ENST00000579558 TRAM1L1Q8N609 369 aa23.7■■□□□ 1.38
SHMT1-206ENST00000579558 TTC13Q8NBP0 860 aa23.7■■□□□ 1.38
SHMT1-206ENST00000579558 TRABDQ9H4I3 376 aa23.7■■□□□ 1.38
SHMT1-206ENST00000579558 ZNHIT2Q9UHR6 403 aa23.7■■□□□ 1.38
SHMT1-206ENST00000579558 RAXQ9Y2V3 346 aa23.7■■□□□ 1.38
SHMT1-206ENST00000579558 RNF215Q9Y6U7 377 aa23.7■■□□□ 1.38
SHMT1-206ENST00000579558 DMXL2Q8TDJ6 3036 aa23.7■■□□□ 1.38
SHMT1-206ENST00000579558 SCN8AQ9UQD0 1980 aa23.69■■□□□ 1.38
SHMT1-206ENST00000579558 DNAJC6O75061 913 aa23.69■■□□□ 1.38
SHMT1-206ENST00000579558 USP12O75317 370 aa23.69■■□□□ 1.38
SHMT1-206ENST00000579558 BPIP17213 487 aa23.69■■□□□ 1.38
SHMT1-206ENST00000579558 MAZP56270 477 aaKnown RBP23.69■■□□□ 1.38
SHMT1-206ENST00000579558 CCL7P80098 99 aa23.69■■□□□ 1.38
SHMT1-206ENST00000579558 GORASP1Q9BQQ3 440 aa23.69■■□□□ 1.38
SHMT1-206ENST00000579558 BPIFA1Q9NP55 256 aa23.69■■□□□ 1.38
SHMT1-206ENST00000579558 HACD3Q9P035 362 aa23.69■■□□□ 1.38
SHMT1-206ENST00000579558 LRIT1Q9P2V4 623 aa23.69■■□□□ 1.38
SHMT1-206ENST00000579558 APPL1Q9UKG1 709 aa23.69■■□□□ 1.38
SHMT1-206ENST00000579558 NTN3O00634 580 aaPredicted RBP23.68■■□□□ 1.38
SHMT1-206ENST00000579558 ZNF189O75820 626 aaPredicted RBP23.68■■□□□ 1.38
SHMT1-206ENST00000579558 RPLP0P05388 317 aaKnown RBP23.68■■□□□ 1.38
SHMT1-206ENST00000579558 PSMB4P28070 264 aa23.68■■□□□ 1.38
SHMT1-206ENST00000579558 LRP8Q14114 963 aa23.68■■□□□ 1.38
SHMT1-206ENST00000579558 PRPSAP1Q14558 356 aa23.68■■□□□ 1.38
SHMT1-206ENST00000579558 PDPK2PQ6A1A2 396 aa23.68■■□□□ 1.38
SHMT1-206ENST00000579558 CCNJLQ8IV13 435 aa23.68■■□□□ 1.38
SHMT1-206ENST00000579558 TTC30BQ8N4P2 665 aa23.68■■□□□ 1.38
SHMT1-206ENST00000579558 Q8N9G6 341 aaPredicted RBP23.68■■□□□ 1.38
SHMT1-206ENST00000579558 CCDC110Q8TBZ0 833 aa23.68■■□□□ 1.38
SHMT1-206ENST00000579558 BLOC1S5Q8TDH9 187 aa23.68■■□□□ 1.38
SHMT1-206ENST00000579558 SPATA13Q96N96 652 aa23.68■■□□□ 1.38
SHMT1-206ENST00000579558 GFM1Q96RP9 751 aaKnown RBP23.68■■□□□ 1.38
SHMT1-206ENST00000579558 FICDQ9BVA6 458 aa23.68■■□□□ 1.38
SHMT1-206ENST00000579558 RMI1Q9H9A7 625 aa23.68■■□□□ 1.38
SHMT1-206ENST00000579558 ARFGAP3Q9NP61 516 aa23.68■■□□□ 1.38
SHMT1-206ENST00000579558 PRKAB1Q9Y478 270 aa23.68■■□□□ 1.38
SHMT1-206ENST00000579558 PCYT1BQ9Y5K3 369 aaPredicted RBP23.68■■□□□ 1.38
SHMT1-206ENST00000579558 ENTPD2Q9Y5L3 495 aa23.68■■□□□ 1.38
SHMT1-206ENST00000579558 APC2O95996 2303 aa23.68■■□□□ 1.38
SHMT1-206ENST00000579558 ACACAQ13085 2346 aa23.67■■□□□ 1.38
SHMT1-206ENST00000579558 NUDT21O43809 227 aaKnown RBP23.67■■□□□ 1.38
SHMT1-206ENST00000579558 BRINP1O60477 761 aa23.67■■□□□ 1.38
SHMT1-206ENST00000579558 SLC25A14O95258 325 aaPredicted RBP23.67■■□□□ 1.38
SHMT1-206ENST00000579558 ECEL1O95672 775 aa23.67■■□□□ 1.38
SHMT1-206ENST00000579558 AGTP01019 485 aa23.67■■□□□ 1.38
SHMT1-206ENST00000579558 PNLIPP16233 465 aa23.67■■□□□ 1.38
SHMT1-206ENST00000579558 HMGCLP35914 325 aa23.67■■□□□ 1.38
SHMT1-206ENST00000579558 KLF1Q13351 362 aaPredicted RBP23.67■■□□□ 1.38
SHMT1-206ENST00000579558 GLT6D1Q7Z4J2 308 aa23.67■■□□□ 1.38
SHMT1-206ENST00000579558 C17orf82Q86X59 251 aaPredicted RBP23.67■■□□□ 1.38
SHMT1-206ENST00000579558 PHYKPLQ8IUZ5 450 aa23.67■■□□□ 1.38
SHMT1-206ENST00000579558 GLYATL1Q969I3 302 aa23.67■■□□□ 1.38
SHMT1-206ENST00000579558 GRAMD1AQ96CP6 724 aa23.67■■□□□ 1.38
SHMT1-206ENST00000579558 ATXN7L3BQ96GX2 97 aa23.67■■□□□ 1.38
SHMT1-206ENST00000579558 PLEKHG4BQ96PX9 1271 aa23.67■■□□□ 1.38
SHMT1-206ENST00000579558 CARD9Q9H257 536 aa23.67■■□□□ 1.38
SHMT1-206ENST00000579558 LRRN3Q9H3W5 708 aa23.67■■□□□ 1.38
SHMT1-206ENST00000579558 AAR2Q9Y312 384 aaKnown RBP23.67■■□□□ 1.38
SHMT1-206ENST00000579558 ZFC3H1O60293 1989 aaKnown RBP23.66■■□□□ 1.38
SHMT1-206ENST00000579558 A0A1W2PQM1 296 aa23.66■■□□□ 1.38
SHMT1-206ENST00000579558 MPOP05164 745 aa23.66■■□□□ 1.38
SHMT1-206ENST00000579558 GABREP78334 506 aa23.66■■□□□ 1.38
SHMT1-206ENST00000579558 BIRC2Q13490 618 aa23.66■■□□□ 1.38
SHMT1-206ENST00000579558 ZNF648Q5T619 568 aaPredicted RBP23.66■■□□□ 1.38
SHMT1-206ENST00000579558 SEL1L2Q5TEA6 688 aa23.66■■□□□ 1.38
SHMT1-206ENST00000579558 CHST15Q7LFX5 561 aaPredicted RBP23.66■■□□□ 1.38
SHMT1-206ENST00000579558 LRRC8AQ8IWT6 810 aa23.66■■□□□ 1.38
SHMT1-206ENST00000579558 NAGSQ8N159 534 aa23.66■■□□□ 1.38
SHMT1-206ENST00000579558 PATE1Q8WXA2 126 aa23.66■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms