RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 LCP2Q13094 533 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 PDK3Q15120 406 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 TSNQ15631 228 aaKnown RBP10.03□□□□□ -0.8
VPS53-220ENST00000576149 PTPRNQ16849 979 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 RNF219Q5W0B1 726 aaPredicted RBP10.03□□□□□ -0.8
VPS53-220ENST00000576149 CXorf57Q6NSI4 855 aaKnown RBP10.03□□□□□ -0.8
VPS53-220ENST00000576149 FBXO39Q8N4B4 442 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 TMEM102Q8N9M5 508 aaPredicted RBP10.03□□□□□ -0.8
VPS53-220ENST00000576149 MYRFLQ96LU7 910 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 GPR21Q99679 349 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 VN1R3Q9BXE9 311 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 ADGRE3Q9BY15 652 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 SEZ6LQ9BYH1 1024 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 FAM192AQ9GZU8 254 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 RNF38Q9H0F5 515 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 TUBB1Q9H4B7 451 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 GALPQ9UBC7 116 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 PTGDR2Q9Y5Y4 395 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 BBIP1A8MTZ0 92 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 CDC7O00311 574 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 KLK8O60259 260 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 DNAJA2O60884 412 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 RNASEH2AO75792 299 aaKnown RBP10.02□□□□□ -0.81
VPS53-220ENST00000576149 CD160O95971 181 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 PYGLP06737 847 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 RPS17P08708 135 aaKnown RBP10.02□□□□□ -0.81
VPS53-220ENST00000576149 CD9P21926 228 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 ARF5P84085 180 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 RHDQ02161 417 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 RALGDSQ12967 914 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 TLR1Q15399 786 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 GEN1Q17RS7 908 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 KIF19Q2TAC6 998 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 SAMD4BQ5PRF9 694 aaKnown RBP10.02□□□□□ -0.81
VPS53-220ENST00000576149 PSAPL1Q6NUJ1 521 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 UGT2A3Q6UWM9 527 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 C16orf59Q7L2K0 433 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 PIANPQ8IYJ0 282 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 RNF168Q8IYW5 571 aaPredicted RBP10.02□□□□□ -0.81
VPS53-220ENST00000576149 MARVELD2Q8N4S9 558 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 NKAPQ8N5F7 415 aaKnown RBP10.02□□□□□ -0.81
VPS53-220ENST00000576149 PIP4K2CQ8TBX8 421 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 WBP2Q969T9 261 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 FUBP1Q96AE4 644 aaKnown RBP10.02□□□□□ -0.81
VPS53-220ENST00000576149 ROPN1LQ96C74 230 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 SPACA7Q96KW9 195 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 KCNA7Q96RP8 456 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 CLSTN3Q9BQT9 956 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 C1QTNF3Q9BXJ4 246 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 KLF16Q9BXK1 252 aaPredicted RBP10.02□□□□□ -0.81
VPS53-220ENST00000576149 CFHR5Q9BXR6 569 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 MUC3BQ9H195 1237 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 FKBPLQ9UIM3 349 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 RAB26Q9ULW5 256 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 ANKRD36A6QL64 1941 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 A0A0J9YYE9 177 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 A0A1B0GTL3 188 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 SYCE1LA8MT33 242 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 TXNDC9O14530 226 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 STX16O14662 325 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 AP1G1O43747 822 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 TMCC1O94876 653 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 ABLIM3O94929 683 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 IRF1P10914 325 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 PKMP14618 531 aaKnown RBP10.02□□□□□ -0.81
VPS53-220ENST00000576149 MC4RP32245 332 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 TTPAP49638 278 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 CHN2P52757 468 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 NAA20P61599 178 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 TRAF2Q12933 501 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 GRB7Q14451 532 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 IL23RQ5VWK5 629 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 ANKS6Q68DC2 871 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 LAYNQ6UX15 382 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 RETREG3Q86VR2 466 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 MFN1Q8IWA4 741 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 DDIASQ8IXT1 998 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 ST13P4Q8IZP2 240 aaPredicted RBP10.02□□□□□ -0.81
VPS53-220ENST00000576149 MIER2Q8N344 545 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 PCYOX1LQ8NBM8 494 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 ZNF461Q8TAF7 563 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 RIN3Q8TB24 985 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 ATP6V1E2Q96A05 226 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 GBP5Q96PP8 586 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 SLC30A3Q99726 388 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 HSFX1Q9UBD0 423 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 GIMAP2Q9UG22 337 aa10.02□□□□□ -0.81
VPS53-220ENST00000576149 TET1Q8NFU7 2136 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 C2orf78A6NCI8 922 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 H7C0S8 307 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 PFDN6O15212 129 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 STX7O15400 261 aaKnown RBP10.01□□□□□ -0.81
VPS53-220ENST00000576149 OR1I1O60431 355 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 SNAP91O60641 907 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 VPS26AO75436 327 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 MATN4O95460 622 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 TSPAN12O95859 305 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 C1RP00736 705 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 GNRH1P01148 92 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 LBPP18428 481 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms