RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 CTAGE8P0CG41 777 aa20.49■□□□□ 0.87
VPS53-210ENST00000571456 HTR1BP28222 390 aa20.49■□□□□ 0.87
VPS53-210ENST00000571456 IGFALSP35858 605 aa20.49■□□□□ 0.87
VPS53-210ENST00000571456 VPS41P49754 854 aa20.49■□□□□ 0.87
VPS53-210ENST00000571456 CYP4F3Q08477 520 aa20.49■□□□□ 0.87
VPS53-210ENST00000571456 MSLNQ13421 630 aaPredicted RBP20.49■□□□□ 0.87
VPS53-210ENST00000571456 SPARCL1Q14515 664 aa20.49■□□□□ 0.87
VPS53-210ENST00000571456 PNCKQ6P2M8 343 aa20.49■□□□□ 0.87
VPS53-210ENST00000571456 TMPRSS7Q7RTY8 843 aa20.49■□□□□ 0.87
VPS53-210ENST00000571456 CTAGE6Q86UF2 777 aa20.49■□□□□ 0.87
VPS53-210ENST00000571456 CTAGE4Q8IX94 777 aa20.49■□□□□ 0.87
VPS53-210ENST00000571456 TAB3Q8N5C8 712 aaPredicted RBP20.49■□□□□ 0.87
VPS53-210ENST00000571456 CPT1BQ92523 772 aa20.49■□□□□ 0.87
VPS53-210ENST00000571456 BMFQ96LC9 184 aa20.49■□□□□ 0.87
VPS53-210ENST00000571456 RAB17Q9H0T7 212 aa20.49■□□□□ 0.87
VPS53-210ENST00000571456 GDF3Q9NR23 364 aa20.49■□□□□ 0.87
VPS53-210ENST00000571456 APPL1Q9UKG1 709 aa20.49■□□□□ 0.87
VPS53-210ENST00000571456 ZNF106Q9H2Y7 1883 aaKnown RBP20.48■□□□□ 0.87
VPS53-210ENST00000571456 CABIN1Q9Y6J0 2220 aa20.48■□□□□ 0.87
VPS53-210ENST00000571456 DNALI1O14645 258 aaPredicted RBP20.48■□□□□ 0.87
VPS53-210ENST00000571456 CER1O95813 267 aa20.48■□□□□ 0.87
VPS53-210ENST00000571456 PIRTP0C851 137 aa20.48■□□□□ 0.87
VPS53-210ENST00000571456 THEGLP0DJG4 465 aa20.48■□□□□ 0.87
VPS53-210ENST00000571456 ADRA1DP25100 572 aa20.48■□□□□ 0.87
VPS53-210ENST00000571456 CSNK1EP49674 416 aaKnown RBP20.48■□□□□ 0.87
VPS53-210ENST00000571456 THOP1P52888 689 aa20.48■□□□□ 0.87
VPS53-210ENST00000571456 NXPH1P58417 271 aa20.48■□□□□ 0.87
VPS53-210ENST00000571456 KIAA1024LP59773 190 aa20.48■□□□□ 0.87
VPS53-210ENST00000571456 MORF4L2Q15014 288 aa20.48■□□□□ 0.87
VPS53-210ENST00000571456 HENMT1Q5T8I9 393 aaKnown RBP20.48■□□□□ 0.87
VPS53-210ENST00000571456 PTAR1Q7Z6K3 402 aaPredicted RBP20.48■□□□□ 0.87
VPS53-210ENST00000571456 OR52K1Q8NGK4 314 aa20.48■□□□□ 0.87
VPS53-210ENST00000571456 SMIM14Q96QK8 99 aa20.48■□□□□ 0.87
VPS53-210ENST00000571456 ABCG8Q9H221 673 aa20.48■□□□□ 0.87
VPS53-210ENST00000571456 WDR26Q9H7D7 661 aa20.48■□□□□ 0.87
VPS53-210ENST00000571456 FZD3Q9NPG1 666 aa20.48■□□□□ 0.87
VPS53-210ENST00000571456 PHPT1Q9NRX4 125 aaPredicted RBP20.48■□□□□ 0.87
VPS53-210ENST00000571456 ANKRD6Q9Y2G4 727 aa20.48■□□□□ 0.87
VPS53-210ENST00000571456 POM121BA6NF01 834 aa20.47■□□□□ 0.87
VPS53-210ENST00000571456 CACNB4O00305 520 aaPredicted RBP20.47■□□□□ 0.87
VPS53-210ENST00000571456 TTI1O43156 1089 aa20.47■□□□□ 0.87
VPS53-210ENST00000571456 SPAM1P38567 509 aa20.47■□□□□ 0.87
VPS53-210ENST00000571456 CTSKP43235 329 aa20.47■□□□□ 0.87
VPS53-210ENST00000571456 ABCG1P45844 678 aa20.47■□□□□ 0.87
VPS53-210ENST00000571456 GPR1P46091 355 aa20.47■□□□□ 0.87
VPS53-210ENST00000571456 INPP5AQ14642 412 aa20.47■□□□□ 0.87
VPS53-210ENST00000571456 SKIDA1Q1XH10 827 aa20.47■□□□□ 0.87
VPS53-210ENST00000571456 RNASEH2BQ5TBB1 312 aaKnown RBP20.47■□□□□ 0.87
VPS53-210ENST00000571456 ADAMTSL4Q6UY14 1074 aa20.47■□□□□ 0.87
VPS53-210ENST00000571456 Q6ZSR6 202 aa20.47■□□□□ 0.87
VPS53-210ENST00000571456 TRAM1L1Q8N609 369 aa20.47■□□□□ 0.87
VPS53-210ENST00000571456 NAT8LQ8N9F0 302 aa20.47■□□□□ 0.87
VPS53-210ENST00000571456 STYXQ8WUJ0 223 aa20.47■□□□□ 0.87
VPS53-210ENST00000571456 EID2BQ96D98 161 aa20.47■□□□□ 0.87
VPS53-210ENST00000571456 SNF8Q96H20 258 aa20.47■□□□□ 0.87
VPS53-210ENST00000571456 TEX101Q9BY14 249 aa20.47■□□□□ 0.87
VPS53-210ENST00000571456 MBNL1Q9NR56 388 aaKnown RBP20.47■□□□□ 0.87
VPS53-210ENST00000571456 UTP11Q9Y3A2 253 aaKnown RBP20.47■□□□□ 0.87
VPS53-210ENST00000571456 COL6A6A6NMZ7 2263 aa20.47■□□□□ 0.87
VPS53-210ENST00000571456 SPTY2D1-AS1A0A0U1RR47 76 aa20.46■□□□□ 0.87
VPS53-210ENST00000571456 MAGEB16A2A368 324 aa20.46■□□□□ 0.87
VPS53-210ENST00000571456 TRABD2BA6NFA1 517 aa20.46■□□□□ 0.87
VPS53-210ENST00000571456 EFCAB8A8MWE9 144 aa20.46■□□□□ 0.87
VPS53-210ENST00000571456 CBFA2T3O75081 653 aa20.46■□□□□ 0.87
VPS53-210ENST00000571456 PCCBP05166 539 aa20.46■□□□□ 0.87
VPS53-210ENST00000571456 ZNF883P0CG24 379 aa20.46■□□□□ 0.87
VPS53-210ENST00000571456 PSMA3P25788 255 aa20.46■□□□□ 0.87
VPS53-210ENST00000571456 ARRB1P49407 418 aaPredicted RBP20.46■□□□□ 0.87
VPS53-210ENST00000571456 C2orf54Q08AI8 447 aa20.46■□□□□ 0.87
VPS53-210ENST00000571456 GRIK2Q13002 908 aa20.46■□□□□ 0.87
VPS53-210ENST00000571456 OLIG2Q13516 323 aa20.46■□□□□ 0.87
VPS53-210ENST00000571456 ITGA9Q13797 1035 aa20.46■□□□□ 0.87
VPS53-210ENST00000571456 NFATC4Q14934 902 aa20.46■□□□□ 0.87
VPS53-210ENST00000571456 PTPRRQ15256 657 aa20.46■□□□□ 0.87
VPS53-210ENST00000571456 GLE1Q53GS7 698 aaKnown RBP20.46■□□□□ 0.87
VPS53-210ENST00000571456 PCID2Q5JVF3 399 aa20.46■□□□□ 0.87
VPS53-210ENST00000571456 RAET1GQ6H3X3 334 aa20.46■□□□□ 0.87
VPS53-210ENST00000571456 MACC1Q6ZN28 852 aa20.46■□□□□ 0.87
VPS53-210ENST00000571456 MMGT1Q8N4V1 131 aa20.46■□□□□ 0.87
VPS53-210ENST00000571456 LSM14AQ8ND56 463 aaKnown RBP20.46■□□□□ 0.87
VPS53-210ENST00000571456 PPHLN1Q8NEY8 458 aaKnown RBP20.46■□□□□ 0.87
VPS53-210ENST00000571456 MYOCQ99972 504 aa20.46■□□□□ 0.87
VPS53-210ENST00000571456 ERP44Q9BS26 406 aa20.46■□□□□ 0.87
VPS53-210ENST00000571456 APOOQ9BUR5 198 aa20.46■□□□□ 0.87
VPS53-210ENST00000571456 MRM3Q9HC36 420 aaKnown RBP20.46■□□□□ 0.87
VPS53-210ENST00000571456 A0A1B0GVT2 93 aa20.45■□□□□ 0.86
VPS53-210ENST00000571456 MROH6A6NGR9 719 aa20.45■□□□□ 0.86
VPS53-210ENST00000571456 H7C0S8 307 aa20.45■□□□□ 0.86
VPS53-210ENST00000571456 TNFRSF10CO14798 259 aa20.45■□□□□ 0.86
VPS53-210ENST00000571456 AURKAO14965 403 aa20.45■□□□□ 0.86
VPS53-210ENST00000571456 LDB2O43679 373 aa20.45■□□□□ 0.86
VPS53-210ENST00000571456 WNT1P04628 370 aa20.45■□□□□ 0.86
VPS53-210ENST00000571456 MYCLP1P12525 358 aaPredicted RBP20.45■□□□□ 0.86
VPS53-210ENST00000571456 BPIP17213 487 aa20.45■□□□□ 0.86
VPS53-210ENST00000571456 IVDP26440 423 aa20.45■□□□□ 0.86
VPS53-210ENST00000571456 DEKP35659 375 aaKnown RBP20.45■□□□□ 0.86
VPS53-210ENST00000571456 BLKP51451 505 aa20.45■□□□□ 0.86
VPS53-210ENST00000571456 ZNF140P52738 457 aaPredicted RBP20.45■□□□□ 0.86
VPS53-210ENST00000571456 CLDN2P57739 230 aa20.45■□□□□ 0.86
VPS53-210ENST00000571456 CALCOCO2Q13137 446 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms