RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 CPNE7Q9UBL6 633 aa17.86■□□□□ 0.45
CLK3-227ENST00000570296 PCDHGA10Q9Y5H3 936 aa17.86■□□□□ 0.45
CLK3-227ENST00000570296 WASH4PA8MWX3 477 aa17.85■□□□□ 0.45
CLK3-227ENST00000570296 PPP1R3GB7ZBB8 358 aa17.85■□□□□ 0.45
CLK3-227ENST00000570296 PSMD11O00231 422 aa17.85■□□□□ 0.45
CLK3-227ENST00000570296 F13A1P00488 732 aa17.85■□□□□ 0.45
CLK3-227ENST00000570296 F3P13726 295 aa17.85■□□□□ 0.45
CLK3-227ENST00000570296 COX6B1P14854 86 aa17.85■□□□□ 0.45
CLK3-227ENST00000570296 VIPR1P32241 457 aa17.85■□□□□ 0.45
CLK3-227ENST00000570296 MARSP56192 900 aaKnown RBP17.85■□□□□ 0.45
CLK3-227ENST00000570296 IZUMO3Q5VZ72 239 aa17.85■□□□□ 0.45
CLK3-227ENST00000570296 MARK2Q7KZI7 788 aaKnown RBP17.85■□□□□ 0.45
CLK3-227ENST00000570296 PHLDB2Q86SQ0 1253 aa17.85■□□□□ 0.45
CLK3-227ENST00000570296 BPHLQ86WA6 291 aaPredicted RBP17.85■□□□□ 0.45
CLK3-227ENST00000570296 UMODL1-AS1Q8N2C9 162 aa17.85■□□□□ 0.45
CLK3-227ENST00000570296 ARFGAP1Q8N6T3 406 aa17.85■□□□□ 0.45
CLK3-227ENST00000570296 TMEM35BQ8NCS4 154 aa17.85■□□□□ 0.45
CLK3-227ENST00000570296 HDAC11Q96DB2 347 aa17.85■□□□□ 0.45
CLK3-227ENST00000570296 TRIM8Q9BZR9 551 aa17.85■□□□□ 0.45
CLK3-227ENST00000570296 RARRES3Q9UL19 164 aa17.85■□□□□ 0.45
CLK3-227ENST00000570296 UBXN7O94888 489 aa17.84■□□□□ 0.45
CLK3-227ENST00000570296 SOD1P00441 154 aa17.84■□□□□ 0.45
CLK3-227ENST00000570296 ZSCAN22P10073 491 aaPredicted RBP17.84■□□□□ 0.45
CLK3-227ENST00000570296 BPIP17213 487 aa17.84■□□□□ 0.45
CLK3-227ENST00000570296 NELFEP18615 380 aaKnown RBP17.84■□□□□ 0.45
CLK3-227ENST00000570296 HNRNPH3P31942 346 aaKnown RBP17.84■□□□□ 0.45
CLK3-227ENST00000570296 CDH5P33151 784 aaPredicted RBP17.84■□□□□ 0.45
CLK3-227ENST00000570296 GPR1P46091 355 aa17.84■□□□□ 0.45
CLK3-227ENST00000570296 VAV2P52735 878 aa17.84■□□□□ 0.45
CLK3-227ENST00000570296 DENND2CQ68D51 928 aa17.84■□□□□ 0.45
CLK3-227ENST00000570296 GJB7Q6PEY0 223 aa17.84■□□□□ 0.45
CLK3-227ENST00000570296 HSD11B1LQ7Z5J1 315 aa17.84■□□□□ 0.45
CLK3-227ENST00000570296 KCNMB4Q86W47 210 aa17.84■□□□□ 0.45
CLK3-227ENST00000570296 TRIM59Q8IWR1 403 aa17.84■□□□□ 0.45
CLK3-227ENST00000570296 TSEN2Q8NCE0 465 aaKnown RBP17.84■□□□□ 0.45
CLK3-227ENST00000570296 INPP5DQ92835 1189 aa17.84■□□□□ 0.45
CLK3-227ENST00000570296 MAGEB5Q9BZ81 275 aa17.84■□□□□ 0.45
CLK3-227ENST00000570296 PLCB1Q9NQ66 1216 aa17.84■□□□□ 0.45
CLK3-227ENST00000570296 CNTRLQ7Z7A1 2325 aa17.83■□□□□ 0.45
CLK3-227ENST00000570296 A0A1W2PQ67 120 aa17.83■□□□□ 0.44
CLK3-227ENST00000570296 F5H423 210 aaPredicted RBP17.83■□□□□ 0.44
CLK3-227ENST00000570296 GOLGA8SH3BPF8 625 aa17.83■□□□□ 0.44
CLK3-227ENST00000570296 E2F3O00716 465 aa17.83■□□□□ 0.44
CLK3-227ENST00000570296 PRAMEF11O60813 436 aa17.83■□□□□ 0.44
CLK3-227ENST00000570296 ALPPP05187 535 aa17.83■□□□□ 0.44
CLK3-227ENST00000570296 STSP08842 583 aa17.83■□□□□ 0.44
CLK3-227ENST00000570296 TYRP1P17643 537 aa17.83■□□□□ 0.44
CLK3-227ENST00000570296 CAPN3P20807 821 aa17.83■□□□□ 0.44
CLK3-227ENST00000570296 EPHB2P29323 1055 aa17.83■□□□□ 0.44
CLK3-227ENST00000570296 UBE2IP63279 158 aaKnown RBP17.83■□□□□ 0.44
CLK3-227ENST00000570296 NSUN2Q08J23 767 aaKnown RBP eCLIP17.83■□□□□ 0.44
CLK3-227ENST00000570296 TUBB3Q13509 450 aa17.83■□□□□ 0.44
CLK3-227ENST00000570296 ZNF235Q14590 738 aa17.83■□□□□ 0.44
CLK3-227ENST00000570296 RAB6CQ53S08 254 aa17.83■□□□□ 0.44
CLK3-227ENST00000570296 CACHD1Q5VU97 1274 aa17.83■□□□□ 0.44
CLK3-227ENST00000570296 ZNF517Q6ZMY9 492 aaPredicted RBP17.83■□□□□ 0.44
CLK3-227ENST00000570296 Q6ZVL8 140 aa17.83■□□□□ 0.44
CLK3-227ENST00000570296 MMP21Q8N119 569 aa17.83■□□□□ 0.44
CLK3-227ENST00000570296 FNIP1Q8TF40 1166 aa17.83■□□□□ 0.44
CLK3-227ENST00000570296 CCDC34Q96HJ3 373 aa17.83■□□□□ 0.44
CLK3-227ENST00000570296 RAB6CQ9H0N0 254 aa17.83■□□□□ 0.44
CLK3-227ENST00000570296 ZNHIT2Q9UHR6 403 aa17.83■□□□□ 0.44
CLK3-227ENST00000570296 SNX7Q9UNH6 387 aa17.83■□□□□ 0.44
CLK3-227ENST00000570296 J3KR12 359 aa17.82■□□□□ 0.44
CLK3-227ENST00000570296 PSMA7O14818 248 aa17.82■□□□□ 0.44
CLK3-227ENST00000570296 KIF1CO43896 1103 aaKnown RBP17.82■□□□□ 0.44
CLK3-227ENST00000570296 KLHL41O60662 606 aa17.82■□□□□ 0.44
CLK3-227ENST00000570296 CPNE3O75131 537 aaKnown RBP17.82■□□□□ 0.44
CLK3-227ENST00000570296 EDN3P14138 238 aa17.82■□□□□ 0.44
CLK3-227ENST00000570296 AMD1P17707 334 aa17.82■□□□□ 0.44
CLK3-227ENST00000570296 GLRBP48167 497 aa17.82■□□□□ 0.44
CLK3-227ENST00000570296 RAPSNQ13702 412 aa17.82■□□□□ 0.44
CLK3-227ENST00000570296 MIIPQ5JXC2 388 aa17.82■□□□□ 0.44
CLK3-227ENST00000570296 TRIM65Q6PJ69 517 aa17.82■□□□□ 0.44
CLK3-227ENST00000570296 TMEM26Q6ZUK4 368 aa17.82■□□□□ 0.44
CLK3-227ENST00000570296 TRIM74Q86UV6 250 aa17.82■□□□□ 0.44
CLK3-227ENST00000570296 FJX1Q86VR8 437 aa17.82■□□□□ 0.44
CLK3-227ENST00000570296 NXPE1Q8N323 547 aa17.82■□□□□ 0.44
CLK3-227ENST00000570296 TM9SF4Q92544 642 aa17.82■□□□□ 0.44
CLK3-227ENST00000570296 MR1Q95460 341 aa17.82■□□□□ 0.44
CLK3-227ENST00000570296 SGSM3Q96HU1 749 aa17.82■□□□□ 0.44
CLK3-227ENST00000570296 WASH6PQ9NQA3 447 aa17.82■□□□□ 0.44
CLK3-227ENST00000570296 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.82■□□□□ 0.44
CLK3-227ENST00000570296 DNAJC6O75061 913 aa17.81■□□□□ 0.44
CLK3-227ENST00000570296 PYGLP06737 847 aa17.81■□□□□ 0.44
CLK3-227ENST00000570296 RAB40ALP0C0E4 278 aa17.81■□□□□ 0.44
CLK3-227ENST00000570296 CYP2A6P11509 494 aaPredicted RBP17.81■□□□□ 0.44
CLK3-227ENST00000570296 LHCGRP22888 699 aa17.81■□□□□ 0.44
CLK3-227ENST00000570296 SSTR2P30874 369 aa17.81■□□□□ 0.44
CLK3-227ENST00000570296 CAPZBP47756 277 aa17.81■□□□□ 0.44
CLK3-227ENST00000570296 AP1S1P61966 158 aa17.81■□□□□ 0.44
CLK3-227ENST00000570296 CDO1Q16878 200 aa17.81■□□□□ 0.44
CLK3-227ENST00000570296 BNC2Q6ZN30 1099 aaPredicted RBP17.81■□□□□ 0.44
CLK3-227ENST00000570296 Q6ZS92 163 aa17.81■□□□□ 0.44
CLK3-227ENST00000570296 CHST15Q7LFX5 561 aaPredicted RBP17.81■□□□□ 0.44
CLK3-227ENST00000570296 CDH24Q86UP0 819 aa17.81■□□□□ 0.44
CLK3-227ENST00000570296 CCDC185Q8N715 623 aa17.81■□□□□ 0.44
CLK3-227ENST00000570296 NTAN1Q96AB6 310 aa17.81■□□□□ 0.44
CLK3-227ENST00000570296 ZDHHC12Q96GR4 267 aa17.81■□□□□ 0.44
CLK3-227ENST00000570296 GSDMAQ96QA5 445 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms