RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 PPARDQ03181 441 aa19.41■□□□□ 0.7
CLN3-225ENST00000566824 PPP1R7Q15435 360 aa19.41■□□□□ 0.7
CLN3-225ENST00000566824 JAMLQ86YT9 394 aa19.41■□□□□ 0.7
CLN3-225ENST00000566824 OXR1Q8N573 874 aa19.41■□□□□ 0.7
CLN3-225ENST00000566824 ZNF548Q8NEK5 533 aaPredicted RBP19.41■□□□□ 0.7
CLN3-225ENST00000566824 LRRC45Q96CN5 670 aa19.41■□□□□ 0.7
CLN3-225ENST00000566824 ZNF778Q96MU6 729 aa19.41■□□□□ 0.7
CLN3-225ENST00000566824 LRRC61Q9BV99 259 aa19.41■□□□□ 0.7
CLN3-225ENST00000566824 CLPBQ9H078 707 aa19.41■□□□□ 0.7
CLN3-225ENST00000566824 CYP4F12Q9HCS2 524 aa19.41■□□□□ 0.7
CLN3-225ENST00000566824 DLL3Q9NYJ7 618 aa19.41■□□□□ 0.7
CLN3-225ENST00000566824 SLC2A6Q9UGQ3 507 aa19.41■□□□□ 0.7
CLN3-225ENST00000566824 PKP3Q9Y446 797 aa19.41■□□□□ 0.7
CLN3-225ENST00000566824 PCDHGB2Q9Y5G2 931 aa19.41■□□□□ 0.7
CLN3-225ENST00000566824 MROH6A6NGR9 719 aa19.4■□□□□ 0.7
CLN3-225ENST00000566824 GOLGA8MH3BSY2 632 aa19.4■□□□□ 0.7
CLN3-225ENST00000566824 GIPC1O14908 333 aa19.4■□□□□ 0.7
CLN3-225ENST00000566824 CRTAMO95727 393 aa19.4■□□□□ 0.7
CLN3-225ENST00000566824 PRSS56P0CW18 603 aa19.4■□□□□ 0.7
CLN3-225ENST00000566824 ARSDP51689 593 aa19.4■□□□□ 0.7
CLN3-225ENST00000566824 HK3P52790 923 aa19.4■□□□□ 0.7
CLN3-225ENST00000566824 DR1Q01658 176 aa19.4■□□□□ 0.7
CLN3-225ENST00000566824 SLC14A1Q13336 389 aa19.4■□□□□ 0.7
CLN3-225ENST00000566824 PEX6Q13608 980 aa19.4■□□□□ 0.7
CLN3-225ENST00000566824 MARK2Q7KZI7 788 aaKnown RBP19.4■□□□□ 0.7
CLN3-225ENST00000566824 CAND1Q86VP6 1230 aaKnown RBP19.4■□□□□ 0.7
CLN3-225ENST00000566824 NAXDQ8IW45 347 aa19.4■□□□□ 0.7
CLN3-225ENST00000566824 DEFB124Q8NES8 71 aa19.4■□□□□ 0.7
CLN3-225ENST00000566824 CCDC97Q96F63 343 aaPredicted RBP19.4■□□□□ 0.7
CLN3-225ENST00000566824 ZSCAN5AQ9BUG6 496 aa19.4■□□□□ 0.7
CLN3-225ENST00000566824 FAM96AQ9H5X1 160 aa19.4■□□□□ 0.7
CLN3-225ENST00000566824 RAD18Q9NS91 495 aa19.4■□□□□ 0.7
CLN3-225ENST00000566824 APOBEC3BQ9UH17 382 aaKnown RBP19.4■□□□□ 0.7
CLN3-225ENST00000566824 ASIC3Q9UHC3 531 aa19.4■□□□□ 0.7
CLN3-225ENST00000566824 MOSPD1Q9UJG1 213 aa19.4■□□□□ 0.7
CLN3-225ENST00000566824 CDC23Q9UJX2 597 aa19.4■□□□□ 0.7
CLN3-225ENST00000566824 SLC17A4Q9Y2C5 497 aa19.4■□□□□ 0.7
CLN3-225ENST00000566824 PLEKHM1Q9Y4G2 1056 aa19.4■□□□□ 0.7
CLN3-225ENST00000566824 DCHS1Q96JQ0 3298 aa19.4■□□□□ 0.7
CLN3-225ENST00000566824 SPTBN2O15020 2390 aa19.4■□□□□ 0.7
CLN3-225ENST00000566824 ZFC3H1O60293 1989 aaKnown RBP19.39■□□□□ 0.7
CLN3-225ENST00000566824 GLYATL1P3A0A0U1RQE8 302 aa19.39■□□□□ 0.69
CLN3-225ENST00000566824 PRSS38A1L453 326 aa19.39■□□□□ 0.69
CLN3-225ENST00000566824 TRIM38O00635 465 aa19.39■□□□□ 0.69
CLN3-225ENST00000566824 CBFA2T3O75081 653 aa19.39■□□□□ 0.69
CLN3-225ENST00000566824 MTX2O75431 263 aa19.39■□□□□ 0.69
CLN3-225ENST00000566824 MGAT1P26572 445 aa19.39■□□□□ 0.69
CLN3-225ENST00000566824 ADCY8P40145 1251 aa19.39■□□□□ 0.69
CLN3-225ENST00000566824 PRRT3Q5FWE3 981 aa19.39■□□□□ 0.69
CLN3-225ENST00000566824 RNASEH2BQ5TBB1 312 aaKnown RBP19.39■□□□□ 0.69
CLN3-225ENST00000566824 ZNF572Q7Z3I7 529 aaPredicted RBP19.39■□□□□ 0.69
CLN3-225ENST00000566824 AGGF1Q8N302 714 aaeCLIP19.39■□□□□ 0.69
CLN3-225ENST00000566824 MPP5Q8N3R9 675 aa19.39■□□□□ 0.69
CLN3-225ENST00000566824 EID2Q8N6I1 236 aa19.39■□□□□ 0.69
CLN3-225ENST00000566824 PNPLA1Q8N8W4 532 aa19.39■□□□□ 0.69
CLN3-225ENST00000566824 NAT8LQ8N9F0 302 aa19.39■□□□□ 0.69
CLN3-225ENST00000566824 CCL4L1Q8NHW4 92 aa19.39■□□□□ 0.69
CLN3-225ENST00000566824 LMX1AQ8TE12 382 aa19.39■□□□□ 0.69
CLN3-225ENST00000566824 SETD7Q8WTS6 366 aaKnown RBP19.39■□□□□ 0.69
CLN3-225ENST00000566824 BTN2A2Q8WVV5 523 aa19.39■□□□□ 0.69
CLN3-225ENST00000566824 GLYATL1Q969I3 302 aa19.39■□□□□ 0.69
CLN3-225ENST00000566824 CDH19Q9H159 772 aa19.39■□□□□ 0.69
CLN3-225ENST00000566824 NLE1Q9NVX2 485 aaPredicted RBP19.39■□□□□ 0.69
CLN3-225ENST00000566824 SUFUQ9UMX1 484 aa19.39■□□□□ 0.69
CLN3-225ENST00000566824 PRKAB1Q9Y478 270 aa19.39■□□□□ 0.69
CLN3-225ENST00000566824 ST14Q9Y5Y6 855 aa19.39■□□□□ 0.69
CLN3-225ENST00000566824 ARHGEF17Q96PE2 2063 aaPredicted RBP19.39■□□□□ 0.69
CLN3-225ENST00000566824 GOLGA4Q13439 2230 aaKnown RBP19.39■□□□□ 0.69
CLN3-225ENST00000566824 TNFRSF10CO14798 259 aa19.38■□□□□ 0.69
CLN3-225ENST00000566824 FFAR2O15552 330 aa19.38■□□□□ 0.69
CLN3-225ENST00000566824 RASGRP1O95267 797 aa19.38■□□□□ 0.69
CLN3-225ENST00000566824 PSMA3P25788 255 aa19.38■□□□□ 0.69
CLN3-225ENST00000566824 CDKN1CP49918 316 aaPredicted RBP19.38■□□□□ 0.69
CLN3-225ENST00000566824 HNRNPKP61978 463 aaKnown RBP eCLIP19.38■□□□□ 0.69
CLN3-225ENST00000566824 LRRC8BQ6P9F7 803 aa19.38■□□□□ 0.69
CLN3-225ENST00000566824 ADGRG6Q86SQ4 1221 aa19.38■□□□□ 0.69
CLN3-225ENST00000566824 OR13J1Q8NGT2 312 aa19.38■□□□□ 0.69
CLN3-225ENST00000566824 NAT14Q8WUY8 206 aa19.38■□□□□ 0.69
CLN3-225ENST00000566824 SCARF2Q96GP6 870 aaPredicted RBP19.38■□□□□ 0.69
CLN3-225ENST00000566824 TRIM56Q9BRZ2 755 aaKnown RBP19.38■□□□□ 0.69
CLN3-225ENST00000566824 TMEM168Q9H0V1 697 aa19.38■□□□□ 0.69
CLN3-225ENST00000566824 CHRAC1Q9NRG0 131 aa19.38■□□□□ 0.69
CLN3-225ENST00000566824 SYBUQ9NX95 663 aa19.38■□□□□ 0.69
CLN3-225ENST00000566824 ATXN10Q9UBB4 475 aa19.38■□□□□ 0.69
CLN3-225ENST00000566824 PCOLCE2Q9UKZ9 415 aa19.38■□□□□ 0.69
CLN3-225ENST00000566824 TCAF1Q9Y4C2 921 aa19.38■□□□□ 0.69
CLN3-225ENST00000566824 DGKBQ9Y6T7 804 aa19.38■□□□□ 0.69
CLN3-225ENST00000566824 OR51F1A6NGY5 319 aa19.37■□□□□ 0.69
CLN3-225ENST00000566824 DNALI1O14645 258 aaPredicted RBP19.37■□□□□ 0.69
CLN3-225ENST00000566824 YKT6O15498 198 aa19.37■□□□□ 0.69
CLN3-225ENST00000566824 AQP9O43315 295 aa19.37■□□□□ 0.69
CLN3-225ENST00000566824 SLC25A14O95258 325 aaPredicted RBP19.37■□□□□ 0.69
CLN3-225ENST00000566824 PRAMEF1O95521 474 aa19.37■□□□□ 0.69
CLN3-225ENST00000566824 ASMTLO95671 621 aa19.37■□□□□ 0.69
CLN3-225ENST00000566824 TNFP01375 233 aa19.37■□□□□ 0.69
CLN3-225ENST00000566824 PYGLP06737 847 aa19.37■□□□□ 0.69
CLN3-225ENST00000566824 MYF5P13349 255 aa19.37■□□□□ 0.69
CLN3-225ENST00000566824 KELP23276 732 aa19.37■□□□□ 0.69
CLN3-225ENST00000566824 GNPDA1P46926 289 aa19.37■□□□□ 0.69
CLN3-225ENST00000566824 CDK16Q00536 496 aa19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms