RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 ZBTB17Q13105 803 aa17.08■□□□□ 0.32
VPS9D1-203ENST00000563798 PDK1Q15118 436 aa17.08■□□□□ 0.32
VPS9D1-203ENST00000563798 TGIF1Q15583 401 aa17.08■□□□□ 0.32
VPS9D1-203ENST00000563798 AMZ1Q400G9 498 aa17.08■□□□□ 0.32
VPS9D1-203ENST00000563798 CHCHD2P9Q5T1J5 151 aaPredicted RBP17.08■□□□□ 0.32
VPS9D1-203ENST00000563798 USP53Q70EK8 1073 aa17.08■□□□□ 0.32
VPS9D1-203ENST00000563798 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.08■□□□□ 0.32
VPS9D1-203ENST00000563798 CCHCR1Q8TD31 782 aa17.08■□□□□ 0.32
VPS9D1-203ENST00000563798 USP7Q93009 1102 aa17.08■□□□□ 0.32
VPS9D1-203ENST00000563798 IMP4Q96G21 291 aaKnown RBP17.08■□□□□ 0.32
VPS9D1-203ENST00000563798 CHP1Q99653 195 aa17.08■□□□□ 0.32
VPS9D1-203ENST00000563798 PKD2L2Q9NZM6 624 aa17.08■□□□□ 0.32
VPS9D1-203ENST00000563798 NFKBIL1Q9UBC1 381 aaPredicted RBP17.08■□□□□ 0.32
VPS9D1-203ENST00000563798 INTUQ9ULD6 942 aa17.08■□□□□ 0.32
VPS9D1-203ENST00000563798 OAS3Q9Y6K5 1087 aaKnown RBP17.08■□□□□ 0.32
VPS9D1-203ENST00000563798 FADS2P1A8MWK0 482 aa17.07■□□□□ 0.32
VPS9D1-203ENST00000563798 INPP4BO15327 924 aa17.07■□□□□ 0.32
VPS9D1-203ENST00000563798 MFAP3LO75121 409 aa17.07■□□□□ 0.32
VPS9D1-203ENST00000563798 THRAP10827 490 aa17.07■□□□□ 0.32
VPS9D1-203ENST00000563798 SLC1A1P43005 524 aa17.07■□□□□ 0.32
VPS9D1-203ENST00000563798 ZFYVE27Q5T4F4 411 aa17.07■□□□□ 0.32
VPS9D1-203ENST00000563798 TMEM164Q5U3C3 297 aa17.07■□□□□ 0.32
VPS9D1-203ENST00000563798 XKR5Q6UX68 686 aa17.07■□□□□ 0.32
VPS9D1-203ENST00000563798 MARK2Q7KZI7 788 aaKnown RBP17.07■□□□□ 0.32
VPS9D1-203ENST00000563798 SLC37A2Q8TED4 501 aa17.07■□□□□ 0.32
VPS9D1-203ENST00000563798 EID2BQ96D98 161 aa17.07■□□□□ 0.32
VPS9D1-203ENST00000563798 CCDC74BQ96LY2 380 aa17.07■□□□□ 0.32
VPS9D1-203ENST00000563798 CCDC42Q96M95 316 aa17.07■□□□□ 0.32
VPS9D1-203ENST00000563798 NHEJ1Q9H9Q4 299 aaPredicted RBP17.07■□□□□ 0.32
VPS9D1-203ENST00000563798 MAGEE1Q9HCI5 957 aa17.07■□□□□ 0.32
VPS9D1-203ENST00000563798 FOXJ2Q9P0K8 574 aa17.07■□□□□ 0.32
VPS9D1-203ENST00000563798 SEPT10Q9P0V9 454 aa17.07■□□□□ 0.32
VPS9D1-203ENST00000563798 PCYT1BQ9Y5K3 369 aaPredicted RBP17.07■□□□□ 0.32
VPS9D1-203ENST00000563798 A6NCN8 305 aa17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 APOL1O14791 398 aa17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 ASMTLO95671 621 aa17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 ATP1A1P05023 1023 aaKnown RBP17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 CCL4P13236 92 aa17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 CSF2RBP32927 897 aa17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 CLCNKAP51800 687 aa17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 DCDC1P59894 354 aa17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 BIRC2Q13490 618 aa17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 TAZQ16635 292 aa17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 KIAA1614Q5VZ46 1190 aa17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 TMEM71Q6P5X7 295 aa17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 IYDQ6PHW0 289 aa17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 TMC3Q7Z5M5 1100 aa17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 ZNF605Q86T29 641 aa17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 MED8Q96G25 268 aa17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 TAAR9Q96RI9 348 aa17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 MAK16Q9BXY0 300 aaKnown RBP17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 SEMA4CQ9C0C4 833 aa17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 SLC25A51Q9H1U9 297 aa17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 CARD9Q9H257 536 aa17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 ZFYVE1Q9HBF4 777 aa17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 SARS2Q9NP81 518 aaKnown RBP17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 RAD18Q9NS91 495 aa17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 DDX56Q9NY93 547 aaKnown RBP17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 KCNK4Q9NYG8 393 aa17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 ZNHIT2Q9UHR6 403 aa17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 HEY1Q9Y5J3 304 aa17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 ADGRG1Q9Y653 693 aa17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 ZNF462Q96JM2 2506 aa17.06■□□□□ 0.32
VPS9D1-203ENST00000563798 GPR89AB7ZAQ6 455 aa17.05■□□□□ 0.32
VPS9D1-203ENST00000563798 PPP1R12AO14974 1030 aaPredicted RBP17.05■□□□□ 0.32
VPS9D1-203ENST00000563798 NUAK1O60285 661 aa17.05■□□□□ 0.32
VPS9D1-203ENST00000563798 EML2O95834 649 aa17.05■□□□□ 0.32
VPS9D1-203ENST00000563798 ITGB2P05107 769 aa17.05■□□□□ 0.32
VPS9D1-203ENST00000563798 TPM1P09493 284 aa17.05■□□□□ 0.32
VPS9D1-203ENST00000563798 GPR89BP0CG08 455 aa17.05■□□□□ 0.32
VPS9D1-203ENST00000563798 FGF3P11487 239 aaPredicted RBP17.05■□□□□ 0.32
VPS9D1-203ENST00000563798 PLA2G2AP14555 144 aa17.05■□□□□ 0.32
VPS9D1-203ENST00000563798 MAPK10P53779 464 aa17.05■□□□□ 0.32
VPS9D1-203ENST00000563798 NKAIN2Q5VXU1 208 aa17.05■□□□□ 0.32
VPS9D1-203ENST00000563798 PDPK2PQ6A1A2 396 aa17.05■□□□□ 0.32
VPS9D1-203ENST00000563798 LYSMD3Q7Z3D4 306 aa17.05■□□□□ 0.32
VPS9D1-203ENST00000563798 NT5DC3Q86UY8 548 aa17.05■□□□□ 0.32
VPS9D1-203ENST00000563798 ZFAND4Q86XD8 727 aa17.05■□□□□ 0.32
VPS9D1-203ENST00000563798 RHOT1Q8IXI2 618 aa17.05■□□□□ 0.32
VPS9D1-203ENST00000563798 AGBL5Q8NDL9 886 aa17.05■□□□□ 0.32
VPS9D1-203ENST00000563798 SGF29Q96ES7 293 aa17.05■□□□□ 0.32
VPS9D1-203ENST00000563798 HERPUD2Q9BSE4 406 aa17.05■□□□□ 0.32
VPS9D1-203ENST00000563798 SPTLC3Q9NUV7 552 aa17.05■□□□□ 0.32
VPS9D1-203ENST00000563798 TBC1D29Q9UFV1 150 aa17.05■□□□□ 0.32
VPS9D1-203ENST00000563798 COL6A6A6NMZ7 2263 aa17.05■□□□□ 0.32
VPS9D1-203ENST00000563798 B4E171 279 aa17.04■□□□□ 0.32
VPS9D1-203ENST00000563798 SLC2A4P14672 509 aa17.04■□□□□ 0.32
VPS9D1-203ENST00000563798 TSPAN7P41732 249 aa17.04■□□□□ 0.32
VPS9D1-203ENST00000563798 NR2C2P49116 596 aa17.04■□□□□ 0.32
VPS9D1-203ENST00000563798 ARSDP51689 593 aa17.04■□□□□ 0.32
VPS9D1-203ENST00000563798 HADHBP55084 474 aaKnown RBP17.04■□□□□ 0.32
VPS9D1-203ENST00000563798 CDK18Q07002 472 aa17.04■□□□□ 0.32
VPS9D1-203ENST00000563798 AP1B1Q10567 949 aa17.04■□□□□ 0.32
VPS9D1-203ENST00000563798 LY6DQ14210 128 aa17.04■□□□□ 0.32
VPS9D1-203ENST00000563798 TEX44Q53QW1 395 aa17.04■□□□□ 0.32
VPS9D1-203ENST00000563798 WDR74Q6RFH5 385 aaPredicted RBP17.04■□□□□ 0.32
VPS9D1-203ENST00000563798 CHST15Q7LFX5 561 aaPredicted RBP17.04■□□□□ 0.32
VPS9D1-203ENST00000563798 RCBTB1Q8NDN9 531 aa17.04■□□□□ 0.32
VPS9D1-203ENST00000563798 SH3KBP1Q96B97 665 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms