RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 LDB1Q86U70 411 aaPredicted RBP16.48■□□□□ 0.23
VPS4A-202ENST00000562754 NLRP8Q86W28 1048 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 TMEFF1Q8IYR6 380 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 ZBTB44Q8NCP5 570 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 DENND6BQ8NEG7 585 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 ZNF398Q8TD17 642 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 SNX19Q92543 992 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 HSPA12BQ96MM6 686 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 LENG8Q96PV6 779 aaPredicted RBP16.48■□□□□ 0.23
VPS4A-202ENST00000562754 FAM167BQ9BTA0 163 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 ZSCAN5AQ9BUG6 496 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 C1QTNF7Q9BXJ2 289 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 ACSS3Q9H6R3 686 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 ASB8Q9H765 288 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 IARS2Q9NSE4 1012 aaKnown RBP16.48■□□□□ 0.23
VPS4A-202ENST00000562754 SMOXQ9NWM0 555 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 ZSCAN32Q9NX65 697 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 RABGEF1Q9UJ41 708 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 CNOT6Q9ULM6 557 aaKnown RBP16.48■□□□□ 0.23
VPS4A-202ENST00000562754 SLC30A1Q9Y6M5 507 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 A0A087WUV0 522 aaPredicted RBP16.47■□□□□ 0.23
VPS4A-202ENST00000562754 CD3EAPO15446 510 aaKnown RBP16.47■□□□□ 0.23
VPS4A-202ENST00000562754 HNRNPA2B1P22626 353 aaKnown RBP16.47■□□□□ 0.23
VPS4A-202ENST00000562754 SLC1A2P43004 574 aa16.47■□□□□ 0.23
VPS4A-202ENST00000562754 GPR1P46091 355 aa16.47■□□□□ 0.23
VPS4A-202ENST00000562754 CLDN2P57739 230 aa16.47■□□□□ 0.23
VPS4A-202ENST00000562754 THOC5Q13769 683 aaKnown RBP16.47■□□□□ 0.23
VPS4A-202ENST00000562754 ITGA9Q13797 1035 aa16.47■□□□□ 0.23
VPS4A-202ENST00000562754 KBTBD12Q3ZCT8 623 aa16.47■□□□□ 0.23
VPS4A-202ENST00000562754 FASTKD1Q53R41 847 aaKnown RBP16.47■□□□□ 0.23
VPS4A-202ENST00000562754 SPDYCQ5MJ68 293 aa16.47■□□□□ 0.23
VPS4A-202ENST00000562754 TEDDM1Q5T9Z0 273 aa16.47■□□□□ 0.23
VPS4A-202ENST00000562754 PNCKQ6P2M8 343 aa16.47■□□□□ 0.23
VPS4A-202ENST00000562754 ZNF449Q6P9G9 518 aa16.47■□□□□ 0.23
VPS4A-202ENST00000562754 GCNT7Q6ZNI0 430 aa16.47■□□□□ 0.23
VPS4A-202ENST00000562754 CYS1Q717R9 158 aa16.47■□□□□ 0.23
VPS4A-202ENST00000562754 DENND6AQ8IWF6 608 aa16.47■□□□□ 0.23
VPS4A-202ENST00000562754 CNTN4Q8IWV2 1026 aa16.47■□□□□ 0.23
VPS4A-202ENST00000562754 OTUD6BQ8N6M0 293 aa16.47■□□□□ 0.23
VPS4A-202ENST00000562754 TMEM145Q8NBT3 493 aa16.47■□□□□ 0.23
VPS4A-202ENST00000562754 GPR150Q8NGU9 434 aa16.47■□□□□ 0.23
VPS4A-202ENST00000562754 CCDC97Q96F63 343 aaPredicted RBP16.47■□□□□ 0.23
VPS4A-202ENST00000562754 LRFN3Q9BTN0 628 aa16.47■□□□□ 0.23
VPS4A-202ENST00000562754 C1QTNF1Q9BXJ1 281 aa16.47■□□□□ 0.23
VPS4A-202ENST00000562754 DUSP15Q9H1R2 295 aaPredicted RBP16.47■□□□□ 0.23
VPS4A-202ENST00000562754 PPANQ9NQ55 473 aaKnown RBP16.47■□□□□ 0.23
VPS4A-202ENST00000562754 DMTF1Q9Y222 760 aa16.47■□□□□ 0.23
VPS4A-202ENST00000562754 GON4LQ3T8J9 2241 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 A0A1W2PPC4 97 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 MEI4A8MW99 385 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 H0Y8X5 98 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 INPP4BO15327 924 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 SHBGP04278 402 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 OGNP20774 298 aaKnown RBP16.46■□□□□ 0.23
VPS4A-202ENST00000562754 TEAD1P28347 426 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 AKT2P31751 481 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 NUDT1P36639 197 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 PTGER3P43115 390 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 NUBP1P53384 320 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 MPP1Q00013 466 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 DBN1Q16643 649 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 TYSND1Q2T9J0 566 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 GPR33Q49SQ1 333 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 KHDC1Q4VXA5 237 aaKnown RBP16.46■□□□□ 0.23
VPS4A-202ENST00000562754 GPRC6AQ5T6X5 926 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 PMS2CLQ68D20 193 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 ADAMTSL4Q6UY14 1074 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 MARK2Q7KZI7 788 aaKnown RBP16.46■□□□□ 0.23
VPS4A-202ENST00000562754 ARMCX6Q7L4S7 300 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 TAS2R42Q7RTR8 314 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 TRIM74Q86UV6 250 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 SERPINA9Q86WD7 417 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 HEATR4Q86WZ0 1026 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 CILP2Q8IUL8 1156 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 NXPE1Q8N323 547 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 GLYATL1Q969I3 302 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 VPS35Q96QK1 796 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 ARGLU1Q9NWB6 273 aaPredicted RBP16.46■□□□□ 0.23
VPS4A-202ENST00000562754 EIF2B4Q9UI10 523 aaKnown RBP16.46■□□□□ 0.23
VPS4A-202ENST00000562754 CRLS1Q9UJA2 301 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 PSAT1Q9Y617 370 aa16.46■□□□□ 0.23
VPS4A-202ENST00000562754 POM121BA6NF01 834 aa16.45■□□□□ 0.22
VPS4A-202ENST00000562754 PRAMEF26H0Y7S4 382 aa16.45■□□□□ 0.22
VPS4A-202ENST00000562754 LILRB5O75023 590 aa16.45■□□□□ 0.22
VPS4A-202ENST00000562754 CD27P26842 260 aa16.45■□□□□ 0.22
VPS4A-202ENST00000562754 CTBP1Q13363 440 aa16.45■□□□□ 0.22
VPS4A-202ENST00000562754 INPP5AQ14642 412 aa16.45■□□□□ 0.22
VPS4A-202ENST00000562754 PLK5Q496M5 336 aa16.45■□□□□ 0.22
VPS4A-202ENST00000562754 MRNIPQ6NTE8 343 aa16.45■□□□□ 0.22
VPS4A-202ENST00000562754 LPCAT2Q7L5N7 544 aa16.45■□□□□ 0.22
VPS4A-202ENST00000562754 C11orf74Q86VG3 221 aa16.45■□□□□ 0.22
VPS4A-202ENST00000562754 LMNTD2Q8IXW0 634 aa16.45■□□□□ 0.22
VPS4A-202ENST00000562754 PPM1NQ8N819 430 aa16.45■□□□□ 0.22
VPS4A-202ENST00000562754 C2CD4AQ8NCU7 369 aaPredicted RBP16.45■□□□□ 0.22
VPS4A-202ENST00000562754 CALML6Q8TD86 181 aa16.45■□□□□ 0.22
VPS4A-202ENST00000562754 BTN2A2Q8WVV5 523 aa16.45■□□□□ 0.22
VPS4A-202ENST00000562754 FOXJ1Q92949 421 aa16.45■□□□□ 0.22
VPS4A-202ENST00000562754 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.45■□□□□ 0.22
VPS4A-202ENST00000562754 FUBP1Q96AE4 644 aaKnown RBP16.45■□□□□ 0.22
VPS4A-202ENST00000562754 ULK4Q96C45 1275 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms