RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 KCND1Q9NSA2 647 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 SLC17A7Q9P2U7 560 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 LNPEPQ9UIQ6 1025 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 VWA7Q9Y334 891 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 SPO11Q9Y5K1 396 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 TCRBV5S1A1TA0A578 114 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 NPEPPSL1A6NEC2 478 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 TK2O00142 265 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 ZBTB14O43829 449 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 SUN1O94901 812 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 ASLP04424 464 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 HCAR3P49019 387 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 TTPAP49638 278 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 METAP1P53582 386 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 SLC20A2Q08357 652 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 ELP6Q0PNE2 266 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 SCAPQ12770 1279 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 ELAVL3Q14576 367 aaKnown RBP5.42□□□□□ -1.54
VPS13C-209ENST00000560637 SIX1Q15475 284 aaPredicted RBP5.42□□□□□ -1.54
VPS13C-209ENST00000560637 CST6Q15828 149 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 QPCTQ16769 361 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 PRSS58Q8IYP2 241 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 GJD3Q8N144 294 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 PTGR2Q8N8N7 351 aaPredicted RBP5.42□□□□□ -1.54
VPS13C-209ENST00000560637 CCDC197Q8NCU1 140 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 TRPC4APQ8TEL6 797 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 ANKRD7Q92527 254 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 TSACCQ96A04 125 aaPredicted RBP5.42□□□□□ -1.54
VPS13C-209ENST00000560637 TUBGCP3Q96CW5 907 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 OTUB2Q96DC9 234 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 SHDQ96IW2 340 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 MAGED4Q96JG8 741 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 MARK4Q96L34 752 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 MYRFLQ96LU7 910 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 TTYH1Q9H313 450 aaPredicted RBP5.42□□□□□ -1.54
VPS13C-209ENST00000560637 SLCO1B3Q9NPD5 702 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 COMMD8Q9NX08 183 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 SOHLH2Q9NX45 425 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 IGSF9Q9P2J2 1179 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 EIF2B4Q9UI10 523 aaKnown RBP5.42□□□□□ -1.54
VPS13C-209ENST00000560637 MID2Q9UJV3 735 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 INTS6Q9UL03 887 aaKnown RBP5.42□□□□□ -1.54
VPS13C-209ENST00000560637 RAB21Q9UL25 225 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 PLAGL1Q9UM63 463 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 SCN5AQ14524 2016 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 A0A0G2JN53 185 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 A8MU76 341 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 E9PBE3 544 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 H3BM21 787 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 LDB2O43679 373 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 KLHL41O60662 606 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 LYPLA1O75608 230 aaPredicted RBP5.42□□□□□ -1.54
VPS13C-209ENST00000560637 USP1O94782 785 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 PKMP14618 531 aaKnown RBP5.42□□□□□ -1.54
VPS13C-209ENST00000560637 ARFIP2P53365 341 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 IRF9Q00978 393 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 SEL1L3Q68CR1 1132 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 FSTL4Q6MZW2 842 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 DNAJC14Q6Y2X3 702 aaPredicted RBP5.42□□□□□ -1.54
VPS13C-209ENST00000560637 ERN2Q76MJ5 926 aaKnown RBP5.42□□□□□ -1.54
VPS13C-209ENST00000560637 NLRP9Q7RTR0 991 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 PIWIL4Q7Z3Z4 852 aaKnown RBP5.42□□□□□ -1.54
VPS13C-209ENST00000560637 CAND1Q86VP6 1230 aaKnown RBP5.42□□□□□ -1.54
VPS13C-209ENST00000560637 PARGQ86W56 976 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 OOSP2Q86WS3 158 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 GPSM1Q86YR5 675 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 RAB42Q8N4Z0 105 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 PHC3Q8NDX5 983 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 VN1R2Q8NFZ6 395 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 RSPRY1Q96DX4 576 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 NUS1Q96E22 293 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 LRRC3BQ96PB8 259 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 IL12RB2Q99665 862 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 CPNE1Q99829 537 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 BOCQ9BWV1 1114 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 PHF7Q9BWX1 381 aaPredicted RBP5.42□□□□□ -1.54
VPS13C-209ENST00000560637 ACSS3Q9H6R3 686 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 WDR26Q9H7D7 661 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 NMRAL1Q9HBL8 299 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 SYTL2Q9HCH5 934 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 HPS4Q9NQG7 708 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 KLC4Q9NSK0 619 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 NCKIPSDQ9NZQ3 722 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 MARCH4Q9P2E8 410 aaPredicted RBP5.42□□□□□ -1.54
VPS13C-209ENST00000560637 SPASTQ9UBP0 616 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 BTRCQ9Y297 605 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 VPS9D1Q9Y2B5 631 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 PARP14Q460N5 1801 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 OTOL1A6NHN0 477 aaPredicted RBP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 NPIPB15A6NHN6 443 aaPredicted RBP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 NRG2O14511 850 aaPredicted RBP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 MAP3K7O43318 606 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 TCF3P15923 654 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 TYRP1P17643 537 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 TCN1P20061 433 aaPredicted RBP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 POLD2P49005 469 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 ALDH9A1P49189 494 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 SESN3P58005 492 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 SATB1Q01826 763 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 PDE1CQ14123 709 aaPredicted RBP5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms