RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 PCDHAC1Q9H158 963 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 CXorf56Q9H5V9 222 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 AKTIPQ9H8T0 292 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 MEAF6Q9HAF1 191 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 PSMD12O00232 456 aaPredicted RBP10.56□□□□□ -0.72
CUX1-217ENST00000558836 PIP5K1BO14986 540 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 ALDOCP09972 364 aaKnown RBP10.56□□□□□ -0.72
CUX1-217ENST00000558836 UGT1A6P19224 532 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 UGT1A1P22309 533 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 UGT1A4P22310 534 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 CD70P32970 193 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 UGT1A3P35503 534 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 UGT1A5P35504 534 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 ARL1P40616 181 aaPredicted RBP10.56□□□□□ -0.72
CUX1-217ENST00000558836 CTSOP43234 321 aaPredicted RBP10.56□□□□□ -0.72
CUX1-217ENST00000558836 STK19P49842 368 aaPredicted RBP10.56□□□□□ -0.72
CUX1-217ENST00000558836 ISLR2Q6UXK2 745 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 BNC2Q6ZN30 1099 aaPredicted RBP10.56□□□□□ -0.72
CUX1-217ENST00000558836 FBXO39Q8N4B4 442 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 RNF217Q8TC41 542 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 SLC22A17Q8WUG5 538 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 ZNF689Q96CS4 500 aaPredicted RBP10.56□□□□□ -0.72
CUX1-217ENST00000558836 TRMT2BQ96GJ1 504 aaKnown RBP10.56□□□□□ -0.72
CUX1-217ENST00000558836 LRCH3Q96II8 777 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 ZNF184Q99676 751 aaPredicted RBP10.56□□□□□ -0.72
CUX1-217ENST00000558836 EFCAB1Q9HAE3 211 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 HCFC1R1Q9NWW0 138 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 ARIH1Q9Y4X5 557 aaPredicted RBP10.56□□□□□ -0.72
CUX1-217ENST00000558836 COL4A6Q14031 1691 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 E5RI56 91 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 FBP2O00757 339 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 PKMP14618 531 aaKnown RBP10.56□□□□□ -0.72
CUX1-217ENST00000558836 PRMT2P55345 433 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 RAD51Q06609 339 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 LAMB3Q13751 1172 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 RFTN1Q14699 578 aaPredicted RBP10.56□□□□□ -0.72
CUX1-217ENST00000558836 ZRSR2Q15696 482 aaKnown RBP10.56□□□□□ -0.72
CUX1-217ENST00000558836 UGT3A2Q3SY77 523 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 C16orf89Q6UX73 402 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 STAG3L4Q8TBR4 150 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 FUBP1Q96AE4 644 aaKnown RBP10.56□□□□□ -0.72
CUX1-217ENST00000558836 LINGO1Q96FE5 620 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 PAWRQ96IZ0 340 aaKnown RBP10.56□□□□□ -0.72
CUX1-217ENST00000558836 ACOX2Q99424 681 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 TRIM8Q9BZR9 551 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 TUBB1Q9H4B7 451 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 CCL26Q9Y258 94 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 OR51B4Q9Y5P0 310 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 AK5Q9Y6K8 562 aa10.56□□□□□ -0.72
CUX1-217ENST00000558836 TRIM43BA6NCK2 446 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 ZBBXA8MT70 800 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 CLDN7O95471 211 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 UBTFL6P0CB48 400 aaPredicted RBP10.55□□□□□ -0.72
CUX1-217ENST00000558836 ACADSP16219 412 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 GCKP35557 465 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 SUOXP51687 545 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 HK2P52789 917 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 HK3P52790 923 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 WDR5P61964 334 aaKnown RBP10.55□□□□□ -0.72
CUX1-217ENST00000558836 MTA1Q13330 715 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 FLOT2Q14254 428 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 TRIP10Q15642 601 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 ZNF423Q2M1K9 1284 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 KIF19Q2TAC6 998 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 PIGGQ5H8A4 983 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 DHDDSQ86SQ9 333 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 TCEAL8Q8IYN2 117 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 CMTM8Q8IZV2 173 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 TTC30BQ8N4P2 665 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 BHLHE22Q8NFJ8 381 aaPredicted RBP10.55□□□□□ -0.72
CUX1-217ENST00000558836 TWIST2Q8WVJ9 160 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 PEX13Q92968 403 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 TRIM43Q96BQ3 446 aaPredicted RBP10.55□□□□□ -0.72
CUX1-217ENST00000558836 L3HYPDHQ96EM0 354 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 ALG14Q96F25 216 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 CORO1BQ9BR76 489 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 INTS10Q9NVR2 710 aaKnown RBP10.55□□□□□ -0.72
CUX1-217ENST00000558836 PIKFYVEQ9Y2I7 2098 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 C1orf232A0A0U1RR37 186 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 TYW5A2RUC4 315 aaKnown RBP10.55□□□□□ -0.72
CUX1-217ENST00000558836 E7ENX8 843 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 H3BNX3 289 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 FKBP6O75344 327 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 SOX11P35716 441 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 SLC26A3P40879 764 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 YBX1P67809 324 aaKnown RBP10.55□□□□□ -0.72
CUX1-217ENST00000558836 CLCQ05315 142 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 CDC16Q13042 620 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 LRRC26Q2I0M4 334 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 LARP4Q71RC2 724 aaKnown RBP eCLIP10.55□□□□□ -0.721e-7■□□□□ 9.8
CUX1-217ENST00000558836 RAB44Q7Z6P3 723 aaPredicted RBP10.55□□□□□ -0.72
CUX1-217ENST00000558836 CLYBLQ8N0X4 340 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 HJURPQ8NCD3 748 aaPredicted RBP10.55□□□□□ -0.72
CUX1-217ENST00000558836 KIAA1191Q96A73 305 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 TUBGCP3Q96CW5 907 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 MRPL1Q9BYD6 325 aaKnown RBP10.55□□□□□ -0.72
CUX1-217ENST00000558836 SYTL2Q9HCH5 934 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 STK39Q9UEW8 545 aa10.55□□□□□ -0.72
CUX1-217ENST00000558836 TRMT6Q9UJA5 497 aaKnown RBP10.55□□□□□ -0.72
CUX1-217ENST00000558836 VCANP13611 3396 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms