RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 ACHEP22303 614 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 CHATP28329 748 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 EIF2S3P41091 472 aaKnown RBP3.15□□□□□ -1.91
TRAV28-201ENST00000557548 ALDH3A2P51648 485 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 SOX10P56693 466 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 BPIFB3P59826 476 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 TUBB4BP68371 445 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 SIRPAP78324 504 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 ADORA2A-AS1P86434 159 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 HSF1Q00613 529 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 MZT1Q08AG7 82 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 ZNF268Q14587 947 aaPredicted RBP3.15□□□□□ -1.91
TRAV28-201ENST00000557548 PROSER3Q2NL68 480 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 TYSND1Q2T9J0 566 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 SMU1Q2TAY7 513 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 EIF2S3LQ2VIR3 472 aaKnown RBP3.15□□□□□ -1.91
TRAV28-201ENST00000557548 LEXMQ3ZCV2 418 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 MIDNQ504T8 468 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 FAM98BQ52LJ0 330 aaKnown RBP3.15□□□□□ -1.91
TRAV28-201ENST00000557548 MIIPQ5JXC2 388 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 SUMO4Q6EEV6 95 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 SIGIRRQ6IA17 410 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 NCAPH2Q6IBW4 605 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 PLEKHA7Q6IQ23 1121 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 ANKRD54Q6NXT1 300 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 ALKBH5Q6P6C2 394 aaKnown RBP3.15□□□□□ -1.91
TRAV28-201ENST00000557548 CASC1Q6TDU7 716 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 ZNF813Q6ZN06 617 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 FAM57BQ71RH2 274 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 MTSS1LQ765P7 747 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 SPATA19Q7Z5L4 167 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 CCDC190Q86UF4 302 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 SFTPA2Q8IWL1 248 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 TUSC5Q8IXB3 177 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 MB21D2Q8IYB1 491 aaPredicted RBP3.15□□□□□ -1.91
TRAV28-201ENST00000557548 ZNF595Q8IYB9 648 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 SYCP3Q8IZU3 236 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 GALNT16Q8N428 558 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 AFAP1Q8N556 730 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 C10orf53Q8N6V4 93 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 SLC4A11Q8NBS3 891 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 SCCPDHQ8NBX0 429 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 GPT2Q8TD30 523 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 BCAS4Q8TDM0 211 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 CCDC47Q96A33 483 aaKnown RBP3.15□□□□□ -1.91
TRAV28-201ENST00000557548 EXOC4Q96A65 974 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 TMEM18Q96B42 140 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 OTULINQ96BN8 352 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 SARAFQ96BY9 339 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 NXNL1Q96CM4 212 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 CABS1Q96KC9 395 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 CCDC43Q96MW1 224 aaKnown RBP3.15□□□□□ -1.91
TRAV28-201ENST00000557548 TIMP4Q99727 224 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 SH2D3AQ9BRG2 576 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 ACAT2Q9BWD1 397 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 B3GNT4Q9C0J1 378 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 KLK15Q9H2R5 256 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 ESRP2Q9H6T0 727 aaKnown RBP3.15□□□□□ -1.91
TRAV28-201ENST00000557548 PPP1R3EQ9H7J1 279 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 ANKZF1Q9H8Y5 726 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 MKKSQ9NPJ1 570 aaPredicted RBP3.15□□□□□ -1.91
TRAV28-201ENST00000557548 ACSS1Q9NUB1 689 aaPredicted RBP3.15□□□□□ -1.91
TRAV28-201ENST00000557548 ADPRHL2Q9NX46 363 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 SLC17A6Q9P2U8 582 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 SLC9A2Q9UBY0 812 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 OR14J1Q9UGF5 321 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 CNOT11Q9UKZ1 510 aaKnown RBP3.15□□□□□ -1.91
TRAV28-201ENST00000557548 STON1Q9Y6Q2 735 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 SLC4A4Q9Y6R1 1079 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 IGSF1Q8N6C5 1336 aa3.15□□□□□ -1.91
TRAV28-201ENST00000557548 KIR2DS5A0A0G2JLQ3 304 aa3.14□□□□□ -1.91
TRAV28-201ENST00000557548 KANSL1LA0AUZ9 987 aa3.14□□□□□ -1.91
TRAV28-201ENST00000557548 H0YIN7 160 aa3.14□□□□□ -1.91
TRAV28-201ENST00000557548 STMND1H3BQB6 276 aa3.14□□□□□ -1.91
TRAV28-201ENST00000557548 CCDC188H7C350 402 aa3.14□□□□□ -1.91
TRAV28-201ENST00000557548 KIR2DS3K7RE56 304 aa3.14□□□□□ -1.91
TRAV28-201ENST00000557548 DDX39AO00148 427 aaKnown RBP3.14□□□□□ -1.91
TRAV28-201ENST00000557548 CLIC2O15247 247 aa3.14□□□□□ -1.91
TRAV28-201ENST00000557548 PLPP2O43688 288 aa3.14□□□□□ -1.91
TRAV28-201ENST00000557548 CREG1O75629 220 aa3.14□□□□□ -1.91
TRAV28-201ENST00000557548 CAMTA2O94983 1202 aa3.14□□□□□ -1.91
TRAV28-201ENST00000557548 GH2P01242 217 aa3.14□□□□□ -1.91
TRAV28-201ENST00000557548 SLPIP03973 132 aa3.14□□□□□ -1.91
TRAV28-201ENST00000557548 SNRNP70P08621 437 aaKnown RBP3.14□□□□□ -1.91
TRAV28-201ENST00000557548 OR52Z1P0C646 297 aa3.14□□□□□ -1.91
TRAV28-201ENST00000557548 G6PDP11413 515 aa3.14□□□□□ -1.91
TRAV28-201ENST00000557548 ENO3P13929 434 aaPredicted RBP3.14□□□□□ -1.91
TRAV28-201ENST00000557548 PFKFB1P16118 471 aa3.14□□□□□ -1.91
TRAV28-201ENST00000557548 MAKP20794 623 aa3.14□□□□□ -1.91
TRAV28-201ENST00000557548 UBA1P22314 1058 aaKnown RBP3.14□□□□□ -1.91
TRAV28-201ENST00000557548 NMBRP28336 390 aa3.14□□□□□ -1.91
TRAV28-201ENST00000557548 HOXC9P31274 260 aa3.14□□□□□ -1.91
TRAV28-201ENST00000557548 PCGF2P35227 344 aa3.14□□□□□ -1.91
TRAV28-201ENST00000557548 PIGAP37287 484 aa3.14□□□□□ -1.91
TRAV28-201ENST00000557548 GDF5P43026 501 aa3.14□□□□□ -1.91
TRAV28-201ENST00000557548 PPP3CCP48454 512 aa3.14□□□□□ -1.91
TRAV28-201ENST00000557548 CACNA2D1P54289 1103 aa3.14□□□□□ -1.91
TRAV28-201ENST00000557548 GAD2Q05329 585 aa3.14□□□□□ -1.91
TRAV28-201ENST00000557548 WASHC5Q12768 1159 aa3.14□□□□□ -1.91
TRAV28-201ENST00000557548 PPIGQ13427 754 aaKnown RBP eCLIP3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms