RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 ERMARDQ5T6L9 678 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 KAZNQ674X7 775 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 CEP128Q6ZU80 1094 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 PARGQ86W56 976 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 VSIG1Q86XK7 387 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 DCP2Q8IU60 420 aaKnown RBP12.53□□□□□ -0.4
SHMT2-230ENST00000557427 RTL3Q8N8U3 475 aaKnown RBP12.53□□□□□ -0.4
SHMT2-230ENST00000557427 OR6K2Q8NGY2 324 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 SLC35B2Q8TB61 432 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 TEKT4Q8WW24 435 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 JPH3Q8WXH2 748 aaPredicted RBP12.53□□□□□ -0.4
SHMT2-230ENST00000557427 USP7Q93009 1102 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 NAT6Q93015 286 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 ATP6V1G3Q96LB4 118 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 IL12RB2Q99665 862 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 HEPHQ9BQS7 1158 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 TM6SF2Q9BZW4 377 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 KLC2Q9H0B6 622 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 RETREG1Q9H6L5 497 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 NOL6Q9H6R4 1146 aaKnown RBP12.53□□□□□ -0.4
SHMT2-230ENST00000557427 CATSPERBQ9H7T0 1116 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 ZWILCHQ9H900 591 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 PADI4Q9UM07 663 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 AP4E1Q9UPM8 1137 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 NEU3Q9UQ49 428 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 LOXL2Q9Y4K0 774 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 HS3ST3A1Q9Y663 406 aa12.53□□□□□ -0.4
SHMT2-230ENST00000557427 ZNF487B1APH4 448 aa12.52□□□□□ -0.41
SHMT2-230ENST00000557427 RASA4BC9J798 803 aa12.52□□□□□ -0.41
SHMT2-230ENST00000557427 H3BM21 787 aa12.52□□□□□ -0.41
SHMT2-230ENST00000557427 EEF2KO00418 725 aaKnown RBP12.52□□□□□ -0.41
SHMT2-230ENST00000557427 TP73O15350 636 aa12.52□□□□□ -0.41
SHMT2-230ENST00000557427 RASA4O43374 803 aa12.52□□□□□ -0.41
SHMT2-230ENST00000557427 PCDH8O95206 1070 aa12.52□□□□□ -0.41
SHMT2-230ENST00000557427 JMJD7P0C870 316 aa12.52□□□□□ -0.41
SHMT2-230ENST00000557427 MYZAPP0CAP1 466 aa12.52□□□□□ -0.41
SHMT2-230ENST00000557427 CCKBRP32239 447 aa12.52□□□□□ -0.41
SHMT2-230ENST00000557427 AIF1P55008 147 aa12.52□□□□□ -0.41
SHMT2-230ENST00000557427 TPI1P60174 286 aa12.52□□□□□ -0.41
SHMT2-230ENST00000557427 ADCY2Q08462 1091 aa12.52□□□□□ -0.41
SHMT2-230ENST00000557427 OASLQ15646 514 aaKnown RBP12.52□□□□□ -0.41
SHMT2-230ENST00000557427 PPP6R3Q5H9R7 873 aaPredicted RBP12.52□□□□□ -0.41
SHMT2-230ENST00000557427 KYAT3Q6YP21 454 aaKnown RBP12.52□□□□□ -0.41
SHMT2-230ENST00000557427 TRMT10CQ7L0Y3 403 aaKnown RBP12.52□□□□□ -0.41
SHMT2-230ENST00000557427 ZNF771Q7L3S4 317 aaPredicted RBP12.52□□□□□ -0.41
SHMT2-230ENST00000557427 PCDH20Q8N6Y1 951 aaKnown RBP12.52□□□□□ -0.41
SHMT2-230ENST00000557427 KCTD6Q8NC69 237 aa12.52□□□□□ -0.41
SHMT2-230ENST00000557427 ZBTB9Q96C00 473 aa12.52□□□□□ -0.41
SHMT2-230ENST00000557427 HMCESQ96FZ2 354 aa12.52□□□□□ -0.41
SHMT2-230ENST00000557427 CELF6Q96J87 481 aaKnown RBP12.52□□□□□ -0.41
SHMT2-230ENST00000557427 PEBP4Q96S96 227 aa12.52□□□□□ -0.41
SHMT2-230ENST00000557427 KCTD15Q96SI1 283 aaPredicted RBP12.52□□□□□ -0.41
SHMT2-230ENST00000557427 TMEM109Q9BVC6 243 aa12.52□□□□□ -0.41
SHMT2-230ENST00000557427 CEP44Q9C0F1 390 aa12.52□□□□□ -0.41
SHMT2-230ENST00000557427 CLPBQ9H078 707 aa12.52□□□□□ -0.41
SHMT2-230ENST00000557427 EPB41L4BQ9H329 900 aa12.52□□□□□ -0.41
SHMT2-230ENST00000557427 ZDHHC6Q9H6R6 413 aa12.52□□□□□ -0.41
SHMT2-230ENST00000557427 DNPEPQ9ULA0 475 aa12.52□□□□□ -0.41
SHMT2-230ENST00000557427 WASF2Q9Y6W5 498 aa12.52□□□□□ -0.41
SHMT2-230ENST00000557427 A1L4Q6 167 aa12.51□□□□□ -0.41
SHMT2-230ENST00000557427 YY2O15391 372 aa12.51□□□□□ -0.41
SHMT2-230ENST00000557427 PAK4O96013 591 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-230ENST00000557427 ADCY8P40145 1251 aa12.51□□□□□ -0.41
SHMT2-230ENST00000557427 RPIAP49247 311 aa12.51□□□□□ -0.41
SHMT2-230ENST00000557427 LMAN1P49257 510 aa12.51□□□□□ -0.41
SHMT2-230ENST00000557427 ARSDP51689 593 aa12.51□□□□□ -0.41
SHMT2-230ENST00000557427 ARSEP51690 589 aa12.51□□□□□ -0.41
SHMT2-230ENST00000557427 CCNHP51946 323 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-230ENST00000557427 ITGA8P53708 1063 aa12.51□□□□□ -0.41
SHMT2-230ENST00000557427 MLLT10P55197 1068 aa12.51□□□□□ -0.41
SHMT2-230ENST00000557427 CCDC15Q0P6D6 951 aa12.51□□□□□ -0.41
SHMT2-230ENST00000557427 PDE1CQ14123 709 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-230ENST00000557427 PDK2Q15119 407 aa12.51□□□□□ -0.41
SHMT2-230ENST00000557427 KCTD19Q17RG1 926 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-230ENST00000557427 MYLK3Q32MK0 819 aa12.51□□□□□ -0.41
SHMT2-230ENST00000557427 BOLA3Q53S33 107 aa12.51□□□□□ -0.41
SHMT2-230ENST00000557427 ATXN7L2Q5T6C5 722 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-230ENST00000557427 DENND2CQ68D51 928 aa12.51□□□□□ -0.41
SHMT2-230ENST00000557427 CYP4V2Q6ZWL3 525 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-230ENST00000557427 ERN2Q76MJ5 926 aaKnown RBP12.51□□□□□ -0.41
SHMT2-230ENST00000557427 GSTA5Q7RTV2 222 aa12.51□□□□□ -0.41
SHMT2-230ENST00000557427 HOOK3Q86VS8 718 aa12.51□□□□□ -0.41
SHMT2-230ENST00000557427 RELL1Q8IUW5 271 aa12.51□□□□□ -0.41
SHMT2-230ENST00000557427 SDR16C5Q8N3Y7 309 aa12.51□□□□□ -0.41
SHMT2-230ENST00000557427 CCDC74AQ96AQ1 378 aa12.51□□□□□ -0.41
SHMT2-230ENST00000557427 GFM1Q96RP9 751 aaKnown RBP12.51□□□□□ -0.41
SHMT2-230ENST00000557427 KLF6Q99612 283 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-230ENST00000557427 SNRNP25Q9BV90 132 aaKnown RBP12.51□□□□□ -0.41
SHMT2-230ENST00000557427 STRADBQ9C0K7 418 aa12.51□□□□□ -0.41
SHMT2-230ENST00000557427 PCDH9Q9HC56 1237 aa12.51□□□□□ -0.41
SHMT2-230ENST00000557427 ANAPC5Q9UJX4 755 aa12.51□□□□□ -0.41
SHMT2-230ENST00000557427 ZNF148Q9UQR1 794 aa12.51□□□□□ -0.41
SHMT2-230ENST00000557427 PCDHB11Q9Y5F2 797 aa12.51□□□□□ -0.41
SHMT2-230ENST00000557427 SDK2Q58EX2 2172 aa12.51□□□□□ -0.41
SHMT2-230ENST00000557427 MED13Q9UHV7 2174 aa12.51□□□□□ -0.41
SHMT2-230ENST00000557427 TRPM6Q9BX84 2022 aa12.5□□□□□ -0.41
SHMT2-230ENST00000557427 POLQO75417 2590 aa12.5□□□□□ -0.41
SHMT2-230ENST00000557427 WASH4PA8MWX3 477 aa12.5□□□□□ -0.41
SHMT2-230ENST00000557427 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-230ENST00000557427 APOC4-APOC2K7ER74 178 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms