RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 METTL6Q8TCB7 284 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 TWIST2Q8WVJ9 160 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 LRTOMTQ8WZ04 291 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 MIEF2Q96C03 454 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 TCEAL4Q96EI5 215 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 ZNF558Q96NG5 402 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 GBP5Q96PP8 586 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 TUBGCP5Q96RT8 1024 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 TDRD1Q9BXT4 1180 aaKnown RBP5.56□□□□□ -1.52
LIMA1-215ENST00000552823 SOX17Q9H6I2 414 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-215ENST00000552823 OLA1Q9NTK5 396 aaKnown RBP5.56□□□□□ -1.52
LIMA1-215ENST00000552823 ABCB8Q9NUT2 735 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 MKS1Q9NXB0 559 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 SCOCQ9UIL1 159 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 CCL26Q9Y258 94 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 ANKRD6Q9Y2G4 727 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 ASCC3Q8N3C0 2202 aaKnown RBP5.56□□□□□ -1.52
LIMA1-215ENST00000552823 DNAH14Q0VDD8 3507 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 A0A087X1B8 175 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 TMEM114B3SHH9 223 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 TDRD15B5MCY1 1934 aaKnown RBP5.56□□□□□ -1.52
LIMA1-215ENST00000552823 NEDD8-MDP1E9PL57 170 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 PDLIM1O00151 329 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 AZIN1O14977 448 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 ANGPT2O15123 496 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 SLC7A4O43246 635 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 SYNCRIPO60506 623 aaKnown RBP5.56□□□□□ -1.52
LIMA1-215ENST00000552823 MAGEC1O60732 1142 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 RNASEH1O60930 286 aaKnown RBP5.56□□□□□ -1.52
LIMA1-215ENST00000552823 VPS26AO75436 327 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 LRATO95237 230 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 SLC25A14O95258 325 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-215ENST00000552823 CLIC3O95833 236 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 PRLP01236 227 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 LRG1P02750 347 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 FGF1P05230 155 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 GSNP06396 782 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 APOA4P06727 396 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 FAM163BP0C2L3 166 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 PKMP14618 531 aaKnown RBP5.56□□□□□ -1.52
LIMA1-215ENST00000552823 CD1DP15813 335 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 HMGA1P17096 107 aaKnown RBP5.56□□□□□ -1.52
LIMA1-215ENST00000552823 ME2P23368 584 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 AKT1P31749 480 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 LEPRP48357 1165 aaKnown RBP5.56□□□□□ -1.52
LIMA1-215ENST00000552823 MAPK10P53779 464 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 PFKPQ01813 784 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 DSG1Q02413 1049 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 CLCQ05315 142 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 CPSF6Q16630 551 aaKnown RBP eCLIP5.56□□□□□ -1.52
LIMA1-215ENST00000552823 PARP15Q460N3 678 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 RABL3Q5HYI8 236 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 ANKS6Q68DC2 871 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 IL27RAQ6UWB1 636 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 DHDDSQ86SQ9 333 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 GPSM1Q86YR5 675 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 SPPL2CQ8IUH8 684 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 ADGRG2Q8IZP9 1017 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 RNF175Q8N4F7 328 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 BEND7Q8N7W2 519 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-215ENST00000552823 C12orf76Q8N812 135 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-215ENST00000552823 FNDC5Q8NAU1 212 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 ZNF461Q8TAF7 563 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 MRPS31Q92665 395 aaKnown RBP5.56□□□□□ -1.52
LIMA1-215ENST00000552823 APBB2Q92870 758 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 SCAMP4Q969E2 229 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 EME1Q96AY2 570 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 C1orf74Q96LT6 269 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 PKP2Q99959 881 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 ECSITQ9BQ95 431 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 NOL11Q9H8H0 719 aaKnown RBP5.56□□□□□ -1.52
LIMA1-215ENST00000552823 EML4Q9HC35 981 aaKnown RBP5.56□□□□□ -1.52
LIMA1-215ENST00000552823 PRSS21Q9Y6M0 314 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 A0A0J9YYE9 177 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 A0A1B0GTW7 788 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 TCAF2A6NFQ2 919 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 PLK4O00444 970 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 INPP4BO15327 924 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 PARNO95453 639 aaKnown RBP5.56□□□□□ -1.52
LIMA1-215ENST00000552823 HLA-DPA1P20036 260 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 NEK2P51955 445 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 PRKAA2P54646 552 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 CASP9P55211 416 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 YBEYP58557 167 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-215ENST00000552823 ELAVL2Q12926 359 aaKnown RBP5.56□□□□□ -1.52
LIMA1-215ENST00000552823 NR6A1Q15406 480 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 DBN1Q16643 649 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 THEMIS2Q5TEJ8 643 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 SERPINA9Q86WD7 417 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 ZNF683Q8IZ20 524 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 MYO1HQ8N1T3 1032 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 LKAAEAR1Q8TD35 194 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 MAGEC3Q8TD91 643 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 DPF3Q92784 378 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 C19orf60Q96EN9 201 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 ZFYVE19Q96K21 471 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 PPM1MQ96MI6 270 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 SERPINI1Q99574 410 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 CIB1Q99828 191 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 ATG10Q9H0Y0 220 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms