RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, human

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS29-208	ENST00000550267	DLST	P36957	453 aa		10.43	□□□□□ -0.74
VPS29-208	ENST00000550267	PAPOLA	P51003	745 aa	Known RBP	10.43	□□□□□ -0.74
VPS29-208	ENST00000550267	GDF10	P55107	478 aa		10.43	□□□□□ -0.74
VPS29-208	ENST00000550267	POLR2L	P62875	67 aa	Known RBP	10.43	□□□□□ -0.74
VPS29-208	ENST00000550267	TNP2	Q05952	138 aa		10.43	□□□□□ -0.74
VPS29-208	ENST00000550267	PEX6	Q13608	980 aa		10.43	□□□□□ -0.74
VPS29-208	ENST00000550267	OXLD1	Q5BKU9	147 aa		10.43	□□□□□ -0.74
VPS29-208	ENST00000550267	RAET1G	Q6H3X3	334 aa		10.43	□□□□□ -0.74
VPS29-208	ENST00000550267	SCYL2	Q6P3W7	929 aa		10.43	□□□□□ -0.74
VPS29-208	ENST00000550267	TMEM135	Q86UB9	458 aa		10.43	□□□□□ -0.74
VPS29-208	ENST00000550267	ESX1	Q8N693	406 aa		10.43	□□□□□ -0.74
VPS29-208	ENST00000550267	OR10G6	Q8NH81	332 aa		10.43	□□□□□ -0.74
VPS29-208	ENST00000550267	CPT1C	Q8TCG5	803 aa		10.43	□□□□□ -0.74
VPS29-208	ENST00000550267	SLC37A2	Q8TED4	501 aa		10.43	□□□□□ -0.74
VPS29-208	ENST00000550267	FNIP1	Q8TF40	1166 aa		10.43	□□□□□ -0.74
VPS29-208	ENST00000550267	SLC20A1	Q8WUM9	679 aa		10.43	□□□□□ -0.74
VPS29-208	ENST00000550267	NCSTN	Q92542	709 aa		10.43	□□□□□ -0.74
VPS29-208	ENST00000550267	OR2M4	Q96R27	311 aa		10.43	□□□□□ -0.74
VPS29-208	ENST00000550267	KRTAP4-8	Q9BYQ9	185 aa		10.43	□□□□□ -0.74
VPS29-208	ENST00000550267	SLC39A8	Q9C0K1	460 aa		10.43	□□□□□ -0.74
VPS29-208	ENST00000550267	KLHL3	Q9UH77	587 aa		10.43	□□□□□ -0.74
VPS29-208	ENST00000550267	RWDD2A	Q9UIY3	292 aa		10.43	□□□□□ -0.74
VPS29-208	ENST00000550267	TLK1	Q9UKI8	766 aa		10.43	□□□□□ -0.74
VPS29-208	ENST00000550267	SLC17A4	Q9Y2C5	497 aa		10.43	□□□□□ -0.74
VPS29-208	ENST00000550267	CCP110	O43303	1012 aa		10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	KATNA1	O75449	491 aa		10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	RFPL1	O75677	317 aa		10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	PALM	O75781	387 aa		10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	HEXIM1	O94992	359 aa	Known RBP	10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	CYP1A1	P04798	512 aa	Predicted RBP	10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	KRT3	P12035	628 aa		10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	ZNF28	P17035	718 aa		10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	GPD1	P21695	349 aa		10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	VIPR1	P32241	457 aa		10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	ETV3	P41162	512 aa		10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	MAPK9	P45984	424 aa		10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	FASLG	P48023	281 aa		10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	NFATC2	Q13469	925 aa		10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	MAP7	Q14244	749 aa		10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	MAN2A1	Q16706	1144 aa		10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	CHCHD2P9	Q5T1J5	151 aa	Predicted RBP	10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	KLHDC7A	Q5VTJ3	777 aa		10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	WDR59	Q6PJI9	974 aa		10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	WDR74	Q6RFH5	385 aa	Predicted RBP	10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	MARK2	Q7KZI7	788 aa	Known RBP	10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	HSD11B1L	Q7Z5J1	315 aa		10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	DTD2	Q96FN9	168 aa		10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	CINP	Q9BW66	212 aa	Predicted RBP	10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	NAA15	Q9BXJ9	866 aa	Known RBP	10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	PRM3	Q9NNZ6	103 aa		10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	NOCT	Q9UK39	431 aa	Known RBP	10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	CROT	Q9UKG9	612 aa		10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	FZD10	Q9ULW2	581 aa		10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	POLH	Q9Y253	713 aa		10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	TMEM98	Q9Y2Y6	226 aa		10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	OAS3	Q9Y6K5	1087 aa	Known RBP	10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	USP9X	Q93008	2570 aa	Predicted RBP	10.42	□□□□□ -0.74
VPS29-208	ENST00000550267	UNC79	Q9P2D8	2635 aa		10.41	□□□□□ -0.74
VPS29-208	ENST00000550267		A0A1W2PNR3	127 aa		10.41	□□□□□ -0.74
VPS29-208	ENST00000550267		F8VZ95	297 aa		10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	FGF10	O15520	208 aa	Predicted RBP	10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	DNAJB5	O75953	348 aa		10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	CHRNB2	P17787	502 aa		10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	LHCGR	P22888	699 aa		10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	DCT	P40126	519 aa		10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	NOP2	P46087	812 aa	Known RBP	10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	SCNN1B	P51168	640 aa		10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	NDST2	P52849	883 aa		10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	PMS2	P54278	862 aa		10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	FMO1	Q01740	532 aa		10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	HHEX	Q03014	270 aa		10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	PTP4A2	Q12974	167 aa		10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	PTPRR	Q15256	657 aa		10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	ARHGAP36	Q6ZRI8	547 aa		10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	RFLNA	Q6ZTI6	216 aa		10.41	□□□□□ -0.74
VPS29-208	ENST00000550267		Q6ZVL8	140 aa		10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	TRIM74	Q86UV6	250 aa		10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	FAM114A1	Q8IWE2	563 aa		10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	CBARP	Q8N350	705 aa	Predicted RBP	10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	SFRP1	Q8N474	314 aa		10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	PDCD6IP	Q8WUM4	868 aa	Known RBP	10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	SELENOO	Q9BVL4	669 aa		10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	ULBP3	Q9BZM4	244 aa		10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	NDST4	Q9H3R1	872 aa		10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	SP110	Q9HB58	689 aa		10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	CASS4	Q9NQ75	786 aa		10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	GPATCH2L	Q9NWQ4	482 aa		10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	SIDT1	Q9NXL6	827 aa	Known RBP	10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	KCTD5	Q9NXV2	234 aa		10.41	□□□□□ -0.74
VPS29-208	ENST00000550267	CD84	Q9UIB8	345 aa		10.41	□□□□□ -0.74
VPS29-208	ENST00000550267		A0A0U1RQS6	177 aa		10.4	□□□□□ -0.74
VPS29-208	ENST00000550267	ARHGAP42	A6NI28	874 aa		10.4	□□□□□ -0.74
VPS29-208	ENST00000550267	SOD1	P00441	154 aa		10.4	□□□□□ -0.74
VPS29-208	ENST00000550267	CP	P00450	1065 aa		10.4	□□□□□ -0.74
VPS29-208	ENST00000550267	UCHL3	P15374	230 aa		10.4	□□□□□ -0.74
VPS29-208	ENST00000550267	TNFAIP3	P21580	790 aa		10.4	□□□□□ -0.74
VPS29-208	ENST00000550267	TEAD1	P28347	426 aa		10.4	□□□□□ -0.74
VPS29-208	ENST00000550267	GPR1	P46091	355 aa		10.4	□□□□□ -0.74
VPS29-208	ENST00000550267	TPI1	P60174	286 aa		10.4	□□□□□ -0.74
VPS29-208	ENST00000550267	AP1S1	P61966	158 aa		10.4	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms