RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 TIMM13Q9Y5L4 95 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-203ENST00000547825 MYLKQ15746 1914 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 A0A087WZ62 844 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 KANSL1LA0AUZ9 987 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 NEMP2A6NFY4 417 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 ARNTLO00327 626 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 RAD51BO15315 384 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 SLC26A4O43511 780 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 TYROBPO43914 113 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 SH3BGRLO75368 114 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 ENDOD1O94919 500 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 TGDSO95455 350 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 VTNP04004 478 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 GOT1P17174 413 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 RPL10P27635 214 aaKnown RBP5.47□□□□□ -1.53
LIMA1-203ENST00000547825 IL1R2P27930 398 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 TCF7P36402 384 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-203ENST00000547825 GABRB2P47870 512 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 AP3M2P53677 418 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 DEFA1P59665 94 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 DEFA3P59666 94 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 ADAM17P78536 824 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 NRG1Q02297 640 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-203ENST00000547825 OLIG2Q13516 323 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 MXD4Q14582 209 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-203ENST00000547825 PDK2Q15119 407 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 AASDHQ4L235 1098 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-203ENST00000547825 AGAP9Q5VTM2 703 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 GTF2IRD2BQ6EKJ0 949 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 TMEM26Q6ZUK4 368 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 ARCQ7LC44 396 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 GTF2IRD2Q86UP8 949 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 CMIPQ8IY22 773 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 ATPAF2Q8N5M1 289 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 GPRC5AQ8NFJ5 357 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 BEST2Q8NFU1 509 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 DCAKDQ8WVC6 231 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 SEPT1Q8WYJ6 367 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 TFAP2BQ92481 460 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 BORCS5Q969J3 196 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 TIFAQ96CG3 184 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 C7orf26Q96N11 449 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 FICDQ9BVA6 458 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 OSBPL11Q9BXB4 747 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 TOR3AQ9H497 397 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 RIBC2Q9H4K1 309 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 MROH8Q9H579 483 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 ALG9Q9H6U8 611 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 SP110Q9HB58 689 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 HMG20AQ9NP66 347 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 ENTPD7Q9NQZ7 604 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 SORCS3Q9UPU3 1222 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 DHRS12A0PJE2 317 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 PDZK1P1A8MUH7 402 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 TMEM233B4DJY2 109 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 SHISA8B8ZZ34 492 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 TRIM38O00635 465 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 PFDN6O15212 129 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 PLIN3O60664 434 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 ADAMTS4O75173 837 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 SEC24AO95486 1093 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 LSM8O95777 96 aaKnown RBP5.46□□□□□ -1.53
LIMA1-203ENST00000547825 TRUB2O95900 331 aaKnown RBP5.46□□□□□ -1.53
LIMA1-203ENST00000547825 STAG3L1P0CL83 205 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 CCDC166P0CW27 439 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 NCK1P16333 377 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 ZNF182P17025 639 aaPredicted RBP5.46□□□□□ -1.53
LIMA1-203ENST00000547825 HDCP19113 662 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 MUTP22033 750 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 ECI1P42126 302 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 ATXN1P54253 815 aaKnown RBP5.46□□□□□ -1.53
LIMA1-203ENST00000547825 GFRA1P56159 465 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 LSAMPQ13449 338 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 SEMA5AQ13591 1074 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 DDX39BQ13838 428 aaKnown RBP5.46□□□□□ -1.53
LIMA1-203ENST00000547825 MAPRE1Q15691 268 aaKnown RBP5.46□□□□□ -1.53
LIMA1-203ENST00000547825 CCDC153Q494R4 210 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 CLEC6AQ6EIG7 209 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 NAPEPLDQ6IQ20 393 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 TAPT1Q6NXT6 567 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 KLHL35Q6PF15 583 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 RNF111Q6ZNA4 994 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 ARHGAP36Q6ZRI8 547 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 CHSY3Q70JA7 882 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 MON1BQ7L1V2 547 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 PAGE2Q7Z2X7 111 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 DPP9Q86TI2 863 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 CDH24Q86UP0 819 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 RALGPS2Q86X27 583 aaPredicted RBP5.46□□□□□ -1.53
LIMA1-203ENST00000547825 PDSS2Q86YH6 399 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 ZDHHC13Q8IUH4 622 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 FLCNQ8NFG4 579 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 OR52K2Q8NGK3 314 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 MZB1Q8WU39 189 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 SNX19Q92543 992 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 NKD2Q969F2 451 aaPredicted RBP5.46□□□□□ -1.53
LIMA1-203ENST00000547825 ACDQ96AP0 544 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 AGAP2Q99490 1192 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 NAT9Q9BTE0 207 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 MCMBPQ9BTE3 642 aa5.46□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms