RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 ZNHIT2Q9UHR6 403 aa15.33■□□□□ 0.04
CLSTN3-213ENST00000541953 SCINQ9Y6U3 715 aa15.33■□□□□ 0.04
CLSTN3-213ENST00000541953 K7EM74 188 aa15.32■□□□□ 0.04
CLSTN3-213ENST00000541953 ASMTLO95671 621 aa15.32■□□□□ 0.04
CLSTN3-213ENST00000541953 ACP5P13686 325 aa15.32■□□□□ 0.04
CLSTN3-213ENST00000541953 ZNF28P17035 718 aa15.32■□□□□ 0.04
CLSTN3-213ENST00000541953 NR1D1P20393 614 aa15.32■□□□□ 0.04
CLSTN3-213ENST00000541953 MAPK9P45984 424 aa15.32■□□□□ 0.04
CLSTN3-213ENST00000541953 PPM1FP49593 454 aaPredicted RBP15.32■□□□□ 0.04
CLSTN3-213ENST00000541953 GFERP55789 205 aa15.32■□□□□ 0.04
CLSTN3-213ENST00000541953 MC2RQ01718 297 aa15.32■□□□□ 0.04
CLSTN3-213ENST00000541953 TYRO3Q06418 890 aa15.32■□□□□ 0.04
CLSTN3-213ENST00000541953 ITKQ08881 620 aa15.32■□□□□ 0.04
CLSTN3-213ENST00000541953 KLHL30Q0D2K2 578 aa15.32■□□□□ 0.04
CLSTN3-213ENST00000541953 GALNT2Q10471 571 aa15.32■□□□□ 0.04
CLSTN3-213ENST00000541953 CDC20Q12834 499 aa15.32■□□□□ 0.04
CLSTN3-213ENST00000541953 ANO6Q4KMQ2 910 aa15.32■□□□□ 0.04
CLSTN3-213ENST00000541953 BOLA3Q53S33 107 aa15.32■□□□□ 0.04
CLSTN3-213ENST00000541953 RALGPS1Q5JS13 557 aa15.32■□□□□ 0.04
CLSTN3-213ENST00000541953 PPP1R2P3Q6NXS1 205 aa15.32■□□□□ 0.04
CLSTN3-213ENST00000541953 LPCAT1Q8NF37 534 aa15.32■□□□□ 0.04
CLSTN3-213ENST00000541953 FAM71BQ8TC56 605 aa15.32■□□□□ 0.04
CLSTN3-213ENST00000541953 TEKT4Q8WW24 435 aa15.32■□□□□ 0.04
CLSTN3-213ENST00000541953 NCSTNQ92542 709 aa15.32■□□□□ 0.04
CLSTN3-213ENST00000541953 MAML1Q92585 1016 aa15.32■□□□□ 0.04
CLSTN3-213ENST00000541953 SIDT1Q9NXL6 827 aaKnown RBP15.32■□□□□ 0.04
CLSTN3-213ENST00000541953 OGFRQ9NZT2 677 aa15.32■□□□□ 0.04
CLSTN3-213ENST00000541953 SCHIP1Q9P0W5 487 aaPredicted RBP15.32■□□□□ 0.04
CLSTN3-213ENST00000541953 TTLL3Q9Y4R7 772 aa15.32■□□□□ 0.04
CLSTN3-213ENST00000541953 ZNF891A8MT65 544 aaPredicted RBP15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 SNX2O60749 519 aa15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 STK17BO94768 372 aa15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 DLGAP3O95886 979 aa15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 MMP2P08253 660 aa15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 ZNF30P17039 623 aa15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 SERPINB6P35237 376 aa15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 GJC1P36383 396 aa15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 GARSP41250 739 aaKnown RBP15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 DPYSL3Q14195 570 aa15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 HENMT1Q5T8I9 393 aaKnown RBP15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 IYDQ6PHW0 289 aa15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 WDR74Q6RFH5 385 aaPredicted RBP15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 NLGN4XQ8N0W4 816 aa15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 BBS5Q8N3I7 341 aa15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 NIPA2Q8N8Q9 360 aa15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 CCDC112Q8NEF3 446 aa15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 NLGN4YQ8NFZ3 816 aaPredicted RBP15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 OR10G6Q8NH81 332 aa15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 EXD1Q8NHP7 514 aa15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 AHCYL2Q96HN2 611 aaKnown RBP15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 ASPSCR1Q9BZE9 553 aa15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 POLR1EQ9GZS1 481 aaKnown RBP15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 GPN2Q9H9Y4 310 aaPredicted RBP15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 SARS2Q9NP81 518 aaKnown RBP15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 PRDM8Q9NQV8 689 aa15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 ANAPC7Q9UJX3 599 aa15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 TMEM184BQ9Y519 407 aaPredicted RBP15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 USP9YO00507 2555 aaPredicted RBP15.31■□□□□ 0.04
CLSTN3-213ENST00000541953 TEX15Q9BXT5 2789 aa15.3■□□□□ 0.04
CLSTN3-213ENST00000541953 FURINP09958 794 aa15.3■□□□□ 0.04
CLSTN3-213ENST00000541953 CCR10P46092 362 aa15.3■□□□□ 0.04
CLSTN3-213ENST00000541953 SPINT3P49223 89 aa15.3■□□□□ 0.04
CLSTN3-213ENST00000541953 EPHB1P54762 984 aa15.3■□□□□ 0.04
CLSTN3-213ENST00000541953 RAB15P59190 212 aa15.3■□□□□ 0.04
CLSTN3-213ENST00000541953 FOXK1P85037 733 aa15.3■□□□□ 0.04
CLSTN3-213ENST00000541953 GBE1Q04446 702 aa15.3■□□□□ 0.04
CLSTN3-213ENST00000541953 SLC10A2Q12908 348 aaPredicted RBP15.3■□□□□ 0.04
CLSTN3-213ENST00000541953 LRP8Q14114 963 aa15.3■□□□□ 0.04
CLSTN3-213ENST00000541953 QPCTQ16769 361 aa15.3■□□□□ 0.04
CLSTN3-213ENST00000541953 DEFB109BQ30KR1 87 aa15.3■□□□□ 0.04
CLSTN3-213ENST00000541953 NLRP8Q86W28 1048 aa15.3■□□□□ 0.04
CLSTN3-213ENST00000541953 NSMCE1Q8WV22 266 aa15.3■□□□□ 0.04
CLSTN3-213ENST00000541953 STARD8Q92502 1023 aa15.3■□□□□ 0.04
CLSTN3-213ENST00000541953 DPYSL5Q9BPU6 564 aa15.3■□□□□ 0.04
CLSTN3-213ENST00000541953 NUP85Q9BW27 656 aa15.3■□□□□ 0.04
CLSTN3-213ENST00000541953 MRPL47Q9HD33 250 aaKnown RBP15.3■□□□□ 0.04
CLSTN3-213ENST00000541953 RBM22Q9NW64 420 aaKnown RBP eCLIP15.3■□□□□ 0.04
CLSTN3-213ENST00000541953 TMEM63CQ9P1W3 806 aa15.3■□□□□ 0.04
CLSTN3-213ENST00000541953 ANKMY1Q9P2S6 941 aa15.3■□□□□ 0.04
CLSTN3-213ENST00000541953 ATXN10Q9UBB4 475 aa15.3■□□□□ 0.04
CLSTN3-213ENST00000541953 ADGRG1Q9Y653 693 aa15.3■□□□□ 0.04
CLSTN3-213ENST00000541953 MN1Q10571 1320 aaPredicted RBP15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 C1orf232A0A0U1RR37 186 aa15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 A0A1B0GTH6 734 aa15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 CLEC18AA5D8T8 446 aa15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 ZW10O43264 779 aa15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 MYBL1P10243 752 aa15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 NFKBIAP25963 317 aa15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 CASRP41180 1078 aa15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 TAS2R40P59535 323 aa15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 UBE2IP63279 158 aaKnown RBP15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 SH3BP2P78314 561 aa15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 GALNT3Q14435 633 aa15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 KRT81Q14533 505 aa15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 PAFAH1B3Q15102 231 aaKnown RBP15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 PLA2G4EQ3MJ16 856 aa15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 CLEC18BQ6UXF7 455 aa15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 LYSMD3Q7Z3D4 306 aa15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 PQLC3Q8N755 202 aa15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 CLEC18CQ8NCF0 446 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms