RNA–Protein interactions for RNA: ENST00000541578.5

SNHG1-217, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 3 BASIC

Gene SNHG1, Length 588 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-217ENST00000541578 RNF183Q96D59 192 aa4.3□□□□□ -1.72
SNHG1-217ENST00000541578 PABPC5Q96DU9 382 aaKnown RBP4.3□□□□□ -1.72
SNHG1-217ENST00000541578 NUDCD1Q96RS6 583 aa4.3□□□□□ -1.72
SNHG1-217ENST00000541578 TMEM47Q9BQJ4 181 aa4.3□□□□□ -1.72
SNHG1-217ENST00000541578 SRSF8Q9BRL6 282 aaKnown RBP4.3□□□□□ -1.72
SNHG1-217ENST00000541578 TUBB6Q9BUF5 446 aa4.3□□□□□ -1.72
SNHG1-217ENST00000541578 GATA5Q9BWX5 397 aaPredicted RBP4.3□□□□□ -1.72
SNHG1-217ENST00000541578 SLC28A3Q9HAS3 691 aa4.3□□□□□ -1.72
SNHG1-217ENST00000541578 SEL1LQ9UBV2 794 aa4.3□□□□□ -1.72
SNHG1-217ENST00000541578 CNOT8Q9UFF9 292 aaKnown RBP4.3□□□□□ -1.72
SNHG1-217ENST00000541578 AMACRQ9UHK6 382 aa4.3□□□□□ -1.72
SNHG1-217ENST00000541578 RAP2CQ9Y3L5 183 aa4.3□□□□□ -1.72
SNHG1-217ENST00000541578 ADGRB3O60242 1522 aa4.3□□□□□ -1.72
SNHG1-217ENST00000541578 ASXL1Q8IXJ9 1541 aa4.3□□□□□ -1.72
SNHG1-217ENST00000541578 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.29□□□□□ -1.72
SNHG1-217ENST00000541578 ANKRD30AQ9BXX3 1397 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 KIF15Q9NS87 1388 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 ARHGEF37A1IGU5 675 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 C17orf102A2RUQ5 167 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 NPIPB11E5RHQ5 1161 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 F8W810 466 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 H3BNX3 289 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 CHL1O00533 1208 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 IKBKBO14920 756 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 WDR46O15213 610 aaKnown RBP4.29□□□□□ -1.72
SNHG1-217ENST00000541578 DIAPH2O60879 1101 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 TBX10O75333 385 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 TPOP07202 933 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 PSG1P11464 419 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 GJA1P17302 382 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 EDN2P20800 178 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 CPT2P23786 658 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 PON1P27169 355 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 HOXA13P31271 388 aaPredicted RBP4.29□□□□□ -1.72
SNHG1-217ENST00000541578 ZNF41P51814 821 aaPredicted RBP4.29□□□□□ -1.72
SNHG1-217ENST00000541578 C1QTNF8P60827 252 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 MRPS5P82675 430 aaKnown RBP4.29□□□□□ -1.72
SNHG1-217ENST00000541578 RBP5P82980 135 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 SORDQ00796 357 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 TFCP2Q12800 502 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 BFSP1Q12934 665 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 KCNC3Q14003 757 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 MYBPC2Q14324 1141 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 PCLAFQ15004 111 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 ARHGEF6Q15052 776 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 ASIC2Q16515 512 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 ASTE1Q2TB18 679 aaPredicted RBP4.29□□□□□ -1.72
SNHG1-217ENST00000541578 LETM2Q2VYF4 491 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 LEXMQ3ZCV2 418 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 MANEAQ5SRI9 462 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 COLCA1Q6ZS62 124 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 CEP97Q8IW35 865 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 DHX40Q8IX18 779 aaKnown RBP4.29□□□□□ -1.72
SNHG1-217ENST00000541578 CCDC13Q8IYE1 715 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 CCAR2Q8N163 923 aaKnown RBP4.29□□□□□ -1.72
SNHG1-217ENST00000541578 IL17RCQ8NAC3 791 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 ZBTB8BQ8NAP8 495 aaPredicted RBP4.29□□□□□ -1.72
SNHG1-217ENST00000541578 HDAC7Q8WUI4 952 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 SECISBP2LQ93073 1101 aaKnown RBP4.29□□□□□ -1.72
SNHG1-217ENST00000541578 SPAG5Q96R06 1193 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 PAFAH2Q99487 392 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 CITED2Q99967 270 aaPredicted RBP4.29□□□□□ -1.72
SNHG1-217ENST00000541578 MXRA8Q9BRK3 442 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 EBF3Q9H4W6 596 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 WDR26Q9H7D7 661 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 LTB4R2Q9NPC1 389 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 ABCF3Q9NUQ8 709 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 CMAHPQ9Y471 501 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 SQORQ9Y6N5 450 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 LMTK2Q8IWU2 1503 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 NOS1P29475 1434 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 MST1RQ04912 1400 aa4.29□□□□□ -1.72
SNHG1-217ENST00000541578 PARD3Q8TEW0 1356 aa4.28□□□□□ -1.72
SNHG1-217ENST00000541578 FAM237AA0A1B0GTK4 181 aa4.28□□□□□ -1.72
SNHG1-217ENST00000541578 TRBC2A0A5B9 178 aa4.28□□□□□ -1.72
SNHG1-217ENST00000541578 OR2A25A4D2G3 310 aa4.28□□□□□ -1.72
SNHG1-217ENST00000541578 FAM90A10PA6NDY2 464 aa4.28□□□□□ -1.72
SNHG1-217ENST00000541578 DDTLA6NHG4 134 aaPredicted RBP4.28□□□□□ -1.72
SNHG1-217ENST00000541578 SMTNL1A8MU46 457 aa4.28□□□□□ -1.72
SNHG1-217ENST00000541578 KRTAP29-1A8MX34 341 aaPredicted RBP4.28□□□□□ -1.72
SNHG1-217ENST00000541578 A8MXE2 369 aa4.28□□□□□ -1.72
SNHG1-217ENST00000541578 RHODO00212 210 aa4.28□□□□□ -1.72
SNHG1-217ENST00000541578 EBAG9O00559 213 aa4.28□□□□□ -1.72
SNHG1-217ENST00000541578 PRPF4O43172 522 aaKnown RBP eCLIP4.28□□□□□ -1.72
SNHG1-217ENST00000541578 UGDHO60701 494 aa4.28□□□□□ -1.72
SNHG1-217ENST00000541578 MITFO75030 526 aaPredicted RBP4.28□□□□□ -1.72
SNHG1-217ENST00000541578 CRYABP02511 175 aaKnown RBP4.28□□□□□ -1.72
SNHG1-217ENST00000541578 ERCC2P18074 760 aa4.28□□□□□ -1.72
SNHG1-217ENST00000541578 ITGAXP20702 1163 aa4.28□□□□□ -1.72
SNHG1-217ENST00000541578 ATP5DP30049 168 aa4.28□□□□□ -1.72
SNHG1-217ENST00000541578 SOX2P48431 317 aa4.28□□□□□ -1.72
SNHG1-217ENST00000541578 PPP5CP53041 499 aa4.28□□□□□ -1.72
SNHG1-217ENST00000541578 CLDN2P57739 230 aa4.28□□□□□ -1.72
SNHG1-217ENST00000541578 LINC00205P59089 165 aa4.28□□□□□ -1.72
SNHG1-217ENST00000541578 SNTB1Q13884 538 aaKnown RBP4.28□□□□□ -1.72
SNHG1-217ENST00000541578 KRT33BQ14525 404 aa4.28□□□□□ -1.72
SNHG1-217ENST00000541578 TNIP1Q15025 636 aa4.28□□□□□ -1.72
SNHG1-217ENST00000541578 ALG11Q2TAA5 492 aa4.28□□□□□ -1.72
SNHG1-217ENST00000541578 PCGF3Q3KNV8 242 aa4.28□□□□□ -1.72
SNHG1-217ENST00000541578 KRBOX4Q5JUW0 171 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms