RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204		F5H5T6	163 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	NME4	O00746	187 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	TPST1	O60507	370 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	PFDN1	O60925	122 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	HSPA8	P11142	646 aa	Known RBP	12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	GPX3	P22352	226 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	GALK1	P51570	392 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	GALNT1	Q10472	559 aa	Predicted RBP	12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	DCTN2	Q13561	401 aa	Known RBP	12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	VPS26B	Q4G0F5	336 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	KIAA1841	Q6NSI8	718 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	PPP4R4	Q6NUP7	873 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	ISCA2	Q86U28	154 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	SPPL2C	Q8IUH8	684 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	CILP2	Q8IUL8	1156 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	ERI1	Q8IV48	349 aa	Known RBP	12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	ANKFN1	Q8N957	763 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	CALML6	Q8TD86	181 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	TFAP2C	Q92754	450 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	BHMT	Q93088	406 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	TSPAN17	Q96FV3	270 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	TBATA	Q96M53	351 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	CLK4	Q9HAZ1	481 aa	Known RBP	12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	RHBDL2	Q9NX52	303 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	MAP10	Q9P2G4	905 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	CROCC	Q5TZA2	2017 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	CASP8AP2	Q9UKL3	1982 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	BMP2	P12643	396 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	ALDH7A1	P49419	539 aa	Known RBP	12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	SH3BP2	P78314	561 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	CAPRIN1	Q14444	709 aa	Known RBP	12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	GEN1	Q17RS7	908 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	UNC50	Q53HI1	259 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	TBCEL	Q5QJ74	424 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	HACD2	Q6Y1H2	254 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	ERMP1	Q7Z2K6	904 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	RYBP	Q8N488	228 aa	Predicted RBP	12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	CBR4	Q8N4T8	237 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	ZNF296	Q8WUU4	475 aa	Predicted RBP	12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	PTER	Q96BW5	349 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	DEFB118	Q96PH6	123 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	CYP2S1	Q96SQ9	504 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	TCF12	Q99081	682 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	TRIM8	Q9BZR9	551 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	ARMC1	Q9NVT9	282 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	SMPD4	Q9NXE4	827 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	DNAJC15	Q9Y5T4	150 aa		12.47	□□□□□ -0.41
RNF4-222	ENST00000541204	PRSS56	P0CW18	603 aa		12.46	□□□□□ -0.41
RNF4-222	ENST00000541204	ACADVL	P49748	655 aa		12.46	□□□□□ -0.41
RNF4-222	ENST00000541204	SGSH	P51688	502 aa		12.46	□□□□□ -0.41
RNF4-222	ENST00000541204	ADAR	P55265	1226 aa	Known RBP	12.46	□□□□□ -0.41
RNF4-222	ENST00000541204	SLC14A2	Q15849	920 aa		12.46	□□□□□ -0.41
RNF4-222	ENST00000541204	UGT3A2	Q3SY77	523 aa		12.46	□□□□□ -0.41
RNF4-222	ENST00000541204	SPOUT1	Q5T280	376 aa	Known RBP	12.46	□□□□□ -0.41
RNF4-222	ENST00000541204	ANKS3	Q6ZW76	656 aa		12.46	□□□□□ -0.41
RNF4-222	ENST00000541204	C16orf59	Q7L2K0	433 aa		12.46	□□□□□ -0.41
RNF4-222	ENST00000541204	PCYOX1L	Q8NBM8	494 aa		12.46	□□□□□ -0.41
RNF4-222	ENST00000541204	OR13C4	Q8NGS5	318 aa		12.46	□□□□□ -0.41
RNF4-222	ENST00000541204	ROPN1L	Q96C74	230 aa		12.46	□□□□□ -0.41
RNF4-222	ENST00000541204	SLC45A3	Q96JT2	553 aa		12.46	□□□□□ -0.41
RNF4-222	ENST00000541204	SMOX	Q9NWM0	555 aa		12.46	□□□□□ -0.41
RNF4-222	ENST00000541204	LMCD1	Q9NZU5	365 aa		12.46	□□□□□ -0.41
RNF4-222	ENST00000541204		A0A0U1RQS6	177 aa		12.46	□□□□□ -0.42
RNF4-222	ENST00000541204	LRRC14B	A6NHZ5	514 aa		12.46	□□□□□ -0.42
RNF4-222	ENST00000541204	DRGX	A6NNA5	263 aa		12.46	□□□□□ -0.42
RNF4-222	ENST00000541204	SEC24D	O94855	1032 aa	Predicted RBP	12.46	□□□□□ -0.42
RNF4-222	ENST00000541204	SIX3	O95343	332 aa	Predicted RBP	12.46	□□□□□ -0.42
RNF4-222	ENST00000541204	ATXN1L	P0C7T5	689 aa	Known RBP	12.46	□□□□□ -0.42
RNF4-222	ENST00000541204	CHRM3	P20309	590 aa		12.46	□□□□□ -0.42
RNF4-222	ENST00000541204	ATP5C1	P36542	298 aa	Known RBP	12.46	□□□□□ -0.42
RNF4-222	ENST00000541204	SCNN1B	P51168	640 aa		12.46	□□□□□ -0.42
RNF4-222	ENST00000541204	FOXA1	P55317	472 aa		12.46	□□□□□ -0.42
RNF4-222	ENST00000541204	EPHX4	Q8IUS5	362 aa		12.46	□□□□□ -0.42
RNF4-222	ENST00000541204	ZNF786	Q8N393	782 aa		12.46	□□□□□ -0.42
RNF4-222	ENST00000541204	L3HYPDH	Q96EM0	354 aa		12.46	□□□□□ -0.42
RNF4-222	ENST00000541204	PPP1R2P1	Q96PQ5	205 aa		12.46	□□□□□ -0.42
RNF4-222	ENST00000541204	POLR1E	Q9GZS1	481 aa	Known RBP	12.46	□□□□□ -0.42
RNF4-222	ENST00000541204	ELAC1	Q9H777	363 aa	Known RBP	12.46	□□□□□ -0.42
RNF4-222	ENST00000541204	CCM2L	Q9NUG4	571 aa	Predicted RBP	12.46	□□□□□ -0.42
RNF4-222	ENST00000541204	SLC8A2	Q9UPR5	921 aa		12.46	□□□□□ -0.42
RNF4-222	ENST00000541204	TRIM17	Q9Y577	477 aa		12.46	□□□□□ -0.42
RNF4-222	ENST00000541204	MIA3	Q5JRA6	1907 aa		12.46	□□□□□ -0.42
RNF4-222	ENST00000541204		H7C4K7	107 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	DLGAP1	O14490	977 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	TBC1D4	O60343	1298 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	IGLV3-27	P01718	113 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	CAPN3	P20807	821 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	HERVK_113	P63132	956 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	TUBA4A	P68366	448 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	IL10RB	Q08334	325 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	TMED1	Q13445	227 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	GRB7	Q14451	532 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	PTPRR	Q15256	657 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	PARP15	Q460N3	678 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	CLYBL	Q8N0X4	340 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	HM13	Q8TCT9	377 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	KCNA7	Q96RP8	456 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	GPATCH1	Q9BRR8	931 aa	Known RBP	12.45	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms