RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 HLA-DPA1P20036 260 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 ADRA1DP25100 572 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 GP5P40197 560 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 GRIA2P42262 883 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 LSSP48449 732 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 KPNA2P52292 529 aaKnown RBP8.38□□□□□ -1.07
CHD4-208ENST00000540960 CSE1LP55060 971 aaKnown RBP8.38□□□□□ -1.07
CHD4-208ENST00000540960 SESN2P58004 480 aaPredicted RBP8.38□□□□□ -1.07
CHD4-208ENST00000540960 SLC7A9P82251 487 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 GUCY1A3Q02108 690 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 SLC12A1Q13621 1099 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 FASTKD3Q14CZ7 662 aaKnown RBP8.38□□□□□ -1.07
CHD4-208ENST00000540960 TBR1Q16650 682 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 INSCQ1MX18 579 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 KBTBD12Q3ZCT8 623 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 MSS51Q4VC12 460 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 RAP1GAP2Q684P5 730 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 RETSATQ6NUM9 610 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 KIAA1324Q6UXG2 1013 aaKnown RBP8.38□□□□□ -1.07
CHD4-208ENST00000540960 RGS9BPQ6ZS82 235 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 KIAA0408Q6ZU52 694 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 TMEM135Q86UB9 458 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 ADGRG2Q8IZP9 1017 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 CACNA2D3Q8IZS8 1091 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 CPXM2Q8N436 756 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 TAB3Q8N5C8 712 aaPredicted RBP8.38□□□□□ -1.07
CHD4-208ENST00000540960 SH3RF2Q8TEC5 729 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 CELF6Q96J87 481 aaKnown RBP8.38□□□□□ -1.07
CHD4-208ENST00000540960 PWWP2AQ96N64 755 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 RANBP9Q96S59 729 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 CCT8L2Q96SF2 557 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 FAM167BQ9BTA0 163 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 KIFC1Q9BW19 673 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 KLF16Q9BXK1 252 aaPredicted RBP8.38□□□□□ -1.07
CHD4-208ENST00000540960 CCSER2Q9H7U1 834 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 TRPC7Q9HCX4 862 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 ANLNQ9NQW6 1124 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 TBK1Q9UHD2 729 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 DCDC2Q9UHG0 476 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 RIMKLBQ9ULI2 386 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 SOX13Q9UN79 622 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 RPS6KL1Q9Y6S9 549 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 CSMD2Q7Z408 3487 aa8.38□□□□□ -1.07
CHD4-208ENST00000540960 A0A1B0GTQ1 180 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 WASH3PC4AMC7 463 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 I6L893 689 aaPredicted RBP8.37□□□□□ -1.07
CHD4-208ENST00000540960 COPEO14579 308 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 SLC9A3R1O14745 358 aaPredicted RBP8.37□□□□□ -1.07
CHD4-208ENST00000540960 KDELR3O43731 214 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 STC2O76061 302 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 NFATC1O95644 943 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 OLFM2O95897 454 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 FGF1P05230 155 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 RHOCP08134 193 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 GSTA1P08263 222 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 VIMP08670 466 aaKnown RBP8.37□□□□□ -1.07
CHD4-208ENST00000540960 KRT4P19013 534 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 MGAT1P26572 445 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 CORO1AP31146 461 aaKnown RBP8.37□□□□□ -1.07
CHD4-208ENST00000540960 CASRP41180 1078 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 CTSKP43235 329 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 UQCRFS1P47985 274 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 AFF3P51826 1226 aaKnown RBP8.37□□□□□ -1.07
CHD4-208ENST00000540960 GNA12Q03113 381 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 SLC18A2Q05940 514 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 ITKQ08881 620 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 THOC5Q13769 683 aaKnown RBP8.37□□□□□ -1.07
CHD4-208ENST00000540960 LBRQ14739 615 aaKnown RBP8.37□□□□□ -1.07
CHD4-208ENST00000540960 CRYMQ14894 314 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 DHCR24Q15392 516 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 MPPE1Q53F39 396 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 INO80DQ53TQ3 878 aaPredicted RBP8.37□□□□□ -1.07
CHD4-208ENST00000540960 HP1BP3Q5SSJ5 553 aaPredicted RBP8.37□□□□□ -1.07
CHD4-208ENST00000540960 FAXCQ5TGI0 409 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 FYB2Q5VWT5 728 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 EGFLAMQ63HQ2 1017 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 KYAT3Q6YP21 454 aaKnown RBP8.37□□□□□ -1.07
CHD4-208ENST00000540960 USP53Q70EK8 1073 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 HTR3DQ70Z44 454 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 LSMEM2Q8N112 164 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 MMP21Q8N119 569 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 ARL14EPQ8N8R7 260 aaPredicted RBP8.37□□□□□ -1.07
CHD4-208ENST00000540960 GBP7Q8N8V2 638 aaPredicted RBP8.37□□□□□ -1.07
CHD4-208ENST00000540960 CADM4Q8NFZ8 388 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 LRRC8CQ8TDW0 803 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 DCAKDQ8WVC6 231 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 CKAP2Q8WWK9 683 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 TMA16Q96EY4 203 aaKnown RBP8.37□□□□□ -1.07
CHD4-208ENST00000540960 IFT43Q96FT9 208 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 IMP4Q96G21 291 aaKnown RBP8.37□□□□□ -1.07
CHD4-208ENST00000540960 CERS2Q96G23 380 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 APOPT1Q96IL0 206 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 FEM1CQ96JP0 617 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 CCNL2Q96S94 520 aaPredicted RBP8.37□□□□□ -1.07
CHD4-208ENST00000540960 C19orf43Q9BQ61 176 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 C2orf49Q9BVC5 232 aaPredicted RBP8.37□□□□□ -1.07
CHD4-208ENST00000540960 CINPQ9BW66 212 aaPredicted RBP8.37□□□□□ -1.07
CHD4-208ENST00000540960 ADGRE3Q9BY15 652 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 FAM96AQ9H5X1 160 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 POLR1BQ9H9Y6 1135 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms