RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 ACDQ96AP0 544 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 UTP6Q9NYH9 597 aaKnown RBP13.7□□□□□ -0.22
RTN3-210ENST00000540798 FAM50BQ9Y247 325 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 MTCL1Q9Y4B5 1905 aaKnown RBP13.69□□□□□ -0.22
RTN3-210ENST00000540798 KIAA0355O15063 1070 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 PFDN6O15212 129 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 OR1I1O60431 355 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 BAIAP3O94812 1187 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 PRAMEF12O95522 483 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 RPS17P08708 135 aaKnown RBP13.69□□□□□ -0.22
RTN3-210ENST00000540798 ARSAP15289 507 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 PFKLP17858 780 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 PTGER3P43115 390 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 CDKN3Q16667 212 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 PPP1R3AQ16821 1122 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 CLEC6AQ6EIG7 209 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 RAB44Q7Z6P3 723 aaPredicted RBP13.69□□□□□ -0.22
RTN3-210ENST00000540798 EFHBQ8N7U6 833 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 MYO19Q96H55 970 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 LBHD1Q9BQE6 289 aaPredicted RBP13.69□□□□□ -0.22
RTN3-210ENST00000540798 C2orf49Q9BVC5 232 aaPredicted RBP13.69□□□□□ -0.22
RTN3-210ENST00000540798 CCDC68Q9H2F9 335 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 EFCAB1Q9HAE3 211 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 LSM7Q9UK45 103 aaKnown RBP13.69□□□□□ -0.22
RTN3-210ENST00000540798 SARDHQ9UL12 918 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 STX16-NPEPL1H3BU86 382 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 K7ERQ8 282 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 STX16O14662 325 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 ECI2O75521 394 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 ZNF821O75541 412 aaPredicted RBP13.69□□□□□ -0.22
RTN3-210ENST00000540798 FGF18O76093 207 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 SIX3O95343 332 aaPredicted RBP13.69□□□□□ -0.22
RTN3-210ENST00000540798 SPATA31D3P0C874 917 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 DPP6P42658 865 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 PSMD8P48556 350 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 CACNG1Q06432 222 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 ZRSR2Q15696 482 aaKnown RBP13.69□□□□□ -0.22
RTN3-210ENST00000540798 PFKFB4Q16877 469 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 MUM1Q2TAK8 710 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 SPATA31D4Q6ZUB0 917 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 HS6ST3Q8IZP7 471 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 RYBPQ8N488 228 aaPredicted RBP13.69□□□□□ -0.22
RTN3-210ENST00000540798 FAM136AQ96C01 138 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 C19orf60Q96EN9 201 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 PCDHB9Q9Y5E1 797 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 DNAJC15Q9Y5T4 150 aa13.69□□□□□ -0.22
RTN3-210ENST00000540798 LRRC14BA6NHZ5 514 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 GAPDHSO14556 408 aaPredicted RBP13.68□□□□□ -0.22
RTN3-210ENST00000540798 UBDO15205 165 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 SMAD6O43541 496 aaKnown RBP13.68□□□□□ -0.22
RTN3-210ENST00000540798 VPS26AO75436 327 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 ESR1P03372 595 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 ARMC12Q5T9G4 340 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 RETSATQ6NUM9 610 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 BNC2Q6ZN30 1099 aaPredicted RBP13.68□□□□□ -0.22
RTN3-210ENST00000540798 PHYKPLQ8IUZ5 450 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 KBTBD2Q8IY47 623 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 FIBINQ8TAL6 211 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 MRPS31Q92665 395 aaKnown RBP13.68□□□□□ -0.22
RTN3-210ENST00000540798 C3orf30Q96M34 536 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 SERPINI1Q99574 410 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 YIPF3Q9GZM5 350 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 TMEM165Q9HC07 324 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 BPIFA1Q9NP55 256 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 RNF112Q9ULX5 631 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 TMCO1Q9UM00 188 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 FIS1Q9Y3D6 152 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.68□□□□□ -0.22
RTN3-210ENST00000540798 SYCE1LA8MT33 242 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 CDC7O00311 574 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 LIN7AO14910 233 aaPredicted RBP13.68□□□□□ -0.22
RTN3-210ENST00000540798 CLASP2O75122 1294 aaKnown RBP13.68□□□□□ -0.22
RTN3-210ENST00000540798 NIPSNAP2O75323 286 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 TSPAN8P19075 237 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 TSNQ15631 228 aaKnown RBP13.68□□□□□ -0.22
RTN3-210ENST00000540798 MPPE1Q53F39 396 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 TCHHL1Q5QJ38 904 aaPredicted RBP13.68□□□□□ -0.22
RTN3-210ENST00000540798 LYSMD3Q7Z3D4 306 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 BBS7Q8IWZ6 715 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 STK40Q8N2I9 435 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 BATF3Q9NR55 127 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 ABCB8Q9NUT2 735 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 CLEC4EQ9ULY5 219 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 H3BNX3 289 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 PPP6CO00743 305 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 SOCS5O75159 536 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 MAPK8P45983 427 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 ACADVLP49748 655 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 CLCN7P51798 805 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 CDH13P55290 713 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 HTRA4P83105 476 aaPredicted RBP13.68□□□□□ -0.22
RTN3-210ENST00000540798 LMAN2Q12907 356 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 RBBP5Q15291 538 aaKnown RBP13.68□□□□□ -0.22
RTN3-210ENST00000540798 MAPRE2Q15555 327 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 ZRANB3Q5FWF4 1079 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 FAM219BQ5XKK7 198 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 GK5Q6ZS86 529 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 METTL3Q86U44 580 aaKnown RBP13.68□□□□□ -0.22
RTN3-210ENST00000540798 EFCAB3Q8N7B9 438 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 SIDT2Q8NBJ9 832 aaKnown RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms