RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 STX7O15400 261 aaKnown RBP16.82■□□□□ 0.28
USP28-208ENST00000540438 AKAP10O43572 662 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 TMCC1O94876 653 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 OR4F21O95013 312 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 FDXRP22570 491 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 SLC11A2P49281 568 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 HK3P52790 923 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 FAM189BP81408 668 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 ARF5P84085 180 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 CLCQ05315 142 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 IRF5Q13568 498 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 FAM45BPQ6NSW5 357 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 KIAA0408Q6ZU52 694 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 LYSMD3Q7Z3D4 306 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 APCDD1Q8J025 514 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 FAM45AQ8TCE6 357 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 PTCD2Q8WV60 388 aaKnown RBP16.82■□□□□ 0.28
USP28-208ENST00000540438 TDRD1Q9BXT4 1180 aaKnown RBP16.82■□□□□ 0.28
USP28-208ENST00000540438 PDFQ9HBH1 243 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 CREBZFQ9NS37 354 aa16.82■□□□□ 0.28
USP28-208ENST00000540438 A0A1B0GVG6 124 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 A0A1W2PQ67 120 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 WASH4PA8MWX3 477 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 PLOD2O00469 737 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 ACOT8O14734 319 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 SYN3O14994 580 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 RTN3O95197 1032 aaPredicted RBP16.81■□□□□ 0.28
USP28-208ENST00000540438 STX1BP61266 288 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 MRPL58Q14197 206 aaKnown RBP16.81■□□□□ 0.28
USP28-208ENST00000540438 MAP7D1Q3KQU3 841 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 UGT3A2Q3SY77 523 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 POM121L1PQ3SYA9 428 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 FAM26DQ5JW98 314 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 HECTD3Q5T447 861 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 DNAJC14Q6Y2X3 702 aaPredicted RBP16.81■□□□□ 0.28
USP28-208ENST00000540438 RFLNAQ6ZTI6 216 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 BEND5Q7L4P6 421 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 RALGPS2Q86X27 583 aaPredicted RBP16.81■□□□□ 0.28
USP28-208ENST00000540438 ARHGAP18Q8N392 663 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 PHF12Q96QT6 1004 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 AARSD1Q9BTE6 412 aaKnown RBP16.81■□□□□ 0.28
USP28-208ENST00000540438 HMX1Q9NP08 348 aaPredicted RBP16.81■□□□□ 0.28
USP28-208ENST00000540438 POLG2Q9UHN1 485 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 ZNF225Q9UK10 706 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 CROCCQ5TZA2 2017 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 PATJQ8NI35 1801 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 ARVCFO00192 962 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 FGF1P05230 155 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 HTR6P50406 440 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 KPNA2P52292 529 aaKnown RBP16.81■□□□□ 0.28
USP28-208ENST00000540438 UFM1P61960 85 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 PPP1R8Q12972 351 aaKnown RBP16.81■□□□□ 0.28
USP28-208ENST00000540438 LRP8Q14114 963 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 TIGD2Q4W5G0 525 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 LARP4Q71RC2 724 aaKnown RBP eCLIP16.81■□□□□ 0.28
USP28-208ENST00000540438 HERC6Q8IVU3 1022 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 KLHDC8BQ8IXV7 354 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 CPSF7Q8N684 471 aaKnown RBP16.81■□□□□ 0.28
USP28-208ENST00000540438 MAELQ96JY0 434 aaKnown RBP16.81■□□□□ 0.28
USP28-208ENST00000540438 CAPNS2Q96L46 248 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 CLSTN3Q9BQT9 956 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 MEAF6Q9HAF1 191 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 TRIOO75962 3097 aa16.81■□□□□ 0.28
USP28-208ENST00000540438 H3BNC9 293 aa16.8■□□□□ 0.28
USP28-208ENST00000540438 ATP6V1B2P21281 511 aa16.8■□□□□ 0.28
USP28-208ENST00000540438 SYVN1Q86TM6 617 aa16.8■□□□□ 0.28
USP28-208ENST00000540438 CCDC28BQ9BUN5 200 aa16.8■□□□□ 0.28
USP28-208ENST00000540438 GPR63Q9BZJ6 419 aa16.8■□□□□ 0.28
USP28-208ENST00000540438 UNC93B1Q9H1C4 597 aa16.8■□□□□ 0.28
USP28-208ENST00000540438 MRM3Q9HC36 420 aaKnown RBP16.8■□□□□ 0.28
USP28-208ENST00000540438 MAP10Q9P2G4 905 aa16.8■□□□□ 0.28
USP28-208ENST00000540438 SEPT3Q9UH03 358 aa16.8■□□□□ 0.28
USP28-208ENST00000540438 RIMS3Q9UJD0 308 aa16.8■□□□□ 0.28
USP28-208ENST00000540438 CHD9Q3L8U1 2897 aa16.8■□□□□ 0.28
USP28-208ENST00000540438 C7orf72A4D263 438 aa16.8■□□□□ 0.28
USP28-208ENST00000540438 SLCO1B7G3V0H7 640 aa16.8■□□□□ 0.28
USP28-208ENST00000540438 ATP5BP06576 529 aaKnown RBP16.8■□□□□ 0.28
USP28-208ENST00000540438 NRG1Q02297 640 aaPredicted RBP16.8■□□□□ 0.28
USP28-208ENST00000540438 JADE3Q92613 823 aa16.8■□□□□ 0.28
USP28-208ENST00000540438 ATOH8Q96SQ7 321 aa16.8■□□□□ 0.28
USP28-208ENST00000540438 SEPHS2Q99611 448 aa16.8■□□□□ 0.28
USP28-208ENST00000540438 HGH1Q9BTY7 390 aa16.8■□□□□ 0.28
USP28-208ENST00000540438 TAS2R13Q9NYV9 303 aa16.8■□□□□ 0.28
USP28-208ENST00000540438 CROTQ9UKG9 612 aa16.8■□□□□ 0.28
USP28-208ENST00000540438 OR6C75A6NL08 312 aa16.8■□□□□ 0.28
USP28-208ENST00000540438 UPK3BL1B0FP48 263 aa16.8■□□□□ 0.28
USP28-208ENST00000540438 UPK3BL2E5RIL1 263 aa16.8■□□□□ 0.28
USP28-208ENST00000540438 SH3BGRLO75368 114 aa16.8■□□□□ 0.28
USP28-208ENST00000540438 CD160O95971 181 aa16.8■□□□□ 0.28
USP28-208ENST00000540438 CDH15P55291 814 aa16.8■□□□□ 0.28
USP28-208ENST00000540438 RHOAP61586 193 aa16.8■□□□□ 0.28
USP28-208ENST00000540438 ADGRE1Q14246 886 aa16.8■□□□□ 0.28
USP28-208ENST00000540438 CLYBLQ8N0X4 340 aa16.8■□□□□ 0.28
USP28-208ENST00000540438 OR2T11Q8NH01 316 aa16.8■□□□□ 0.28
USP28-208ENST00000540438 SPTBN5Q9NRC6 3674 aaKnown RBP16.79■□□□□ 0.28
USP28-208ENST00000540438 ANKRD66B4E2M5 251 aa16.79■□□□□ 0.28
USP28-208ENST00000540438 HLA-DPA1P20036 260 aa16.79■□□□□ 0.28
USP28-208ENST00000540438 PRDX6P30041 224 aa16.79■□□□□ 0.28
USP28-208ENST00000540438 STK19P49842 368 aaPredicted RBP16.79■□□□□ 0.28
USP28-208ENST00000540438 DNAJB13P59910 316 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms