RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 LPCAT1Q8NF37 534 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 OR4K2Q8NGD2 314 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 NMD3Q96D46 503 aaKnown RBP10.7□□□□□ -0.7
CLIP1-210ENST00000538120 RMDN1Q96DB5 314 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 TSPAN17Q96FV3 270 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 GCNAQ96QF7 691 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 CATSPERZQ9NTU4 200 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 CXXC1Q9P0U4 656 aaPredicted RBP10.7□□□□□ -0.7
CLIP1-210ENST00000538120 FCF1Q9Y324 198 aaKnown RBP10.7□□□□□ -0.7
CLIP1-210ENST00000538120 RAP2CQ9Y3L5 183 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 PCDHB3Q9Y5E6 796 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 OBSL1O75147 1896 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 CAPN8A6NHC0 703 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 ZBBXA8MT70 800 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 K7ERQ8 282 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 MATN2O00339 956 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 GRID2O43424 1007 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 PIGNO95427 931 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 CRTAMO95727 393 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 PYGLP06737 847 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 C8AP07357 584 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 LTA4HP09960 611 aaKnown RBP10.7□□□□□ -0.7
CLIP1-210ENST00000538120 OGNP20774 298 aaKnown RBP10.7□□□□□ -0.7
CLIP1-210ENST00000538120 KCNC1P48547 511 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 DNAJB13P59910 316 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 ERVFC1P60507 584 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 BTKQ06187 659 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 DYNC1I2Q13409 638 aaKnown RBP10.7□□□□□ -0.7
CLIP1-210ENST00000538120 PDK3Q15120 406 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 TYSND1Q2T9J0 566 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 GRAMD1BQ3KR37 738 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 TMC7Q7Z402 723 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 AGR3Q8TD06 166 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 ACTRT2Q8TDY3 377 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 SLC22A17Q8WUG5 538 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 NAT14Q8WUY8 206 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 MRPS31Q92665 395 aaKnown RBP10.7□□□□□ -0.7
CLIP1-210ENST00000538120 BHMTQ93088 406 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 BRINP2Q9C0B6 783 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 ILKAPQ9H0C8 392 aaPredicted RBP10.7□□□□□ -0.7
CLIP1-210ENST00000538120 FAM96AQ9H5X1 160 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 CFAP97Q9P2B7 532 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 ZDHHC2Q9UIJ5 367 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 VPS28Q9UK41 221 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 ZNF232Q9UNY5 417 aa10.7□□□□□ -0.7
CLIP1-210ENST00000538120 A0A0U1RQS6 177 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 ANKRD66B4E2M5 251 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 FZD6O60353 706 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 LRG1P02750 347 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 PABPC4LP0CB38 370 aaKnown RBP10.69□□□□□ -0.7
CLIP1-210ENST00000538120 NDUFV2P19404 249 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 ATP5F1P24539 256 aaPredicted RBP10.69□□□□□ -0.7
CLIP1-210ENST00000538120 MSX2P35548 267 aaPredicted RBP10.69□□□□□ -0.7
CLIP1-210ENST00000538120 CCR2P41597 374 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 SUOXP51687 545 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 STC1P52823 247 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 TBL3Q12788 808 aaKnown RBP10.69□□□□□ -0.7
CLIP1-210ENST00000538120 LSAMPQ13449 338 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 GRM2Q14416 872 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 FAM83EQ2M2I3 478 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 ATXN7L2Q5T6C5 722 aaPredicted RBP10.69□□□□□ -0.7
CLIP1-210ENST00000538120 GPR158Q5T848 1215 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 FAM45BPQ6NSW5 357 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 MRNIPQ6NTE8 343 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 UGT2A3Q6UWM9 527 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 GLT6D1Q7Z4J2 308 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 KREMEN2Q8NCW0 462 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 TTC16Q8NEE8 873 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 FAM45AQ8TCE6 357 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 SLC46A2Q9BY10 475 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 STK39Q9UEW8 545 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 SORCS3Q9UPU3 1222 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 SSX2IPQ9Y2D8 614 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 MYOCOSA0A1B0GUC4 107 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 A0A1W2PRU2 124 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 HIDE1A8MVS5 230 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 E9PBE3 544 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 SMAD6O43541 496 aaKnown RBP10.69□□□□□ -0.7
CLIP1-210ENST00000538120 KLHL41O60662 606 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 BMP1P13497 986 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 CDKN1CP49918 316 aaPredicted RBP10.69□□□□□ -0.7
CLIP1-210ENST00000538120 RPL14P50914 215 aaKnown RBP10.69□□□□□ -0.7
CLIP1-210ENST00000538120 FOLH1Q04609 750 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 ACAP2Q15057 778 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 TLR1Q15399 786 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 SETMARQ53H47 684 aaPredicted RBP10.69□□□□□ -0.7
CLIP1-210ENST00000538120 AGAP9Q5VTM2 703 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 CPXM2Q8N436 756 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 DCAF4L2Q8NA75 395 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 OR52B2Q96RD2 323 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 AARSD1Q9BTE6 412 aaKnown RBP10.69□□□□□ -0.7
CLIP1-210ENST00000538120 SMG9Q9H0W8 520 aaKnown RBP10.69□□□□□ -0.7
CLIP1-210ENST00000538120 MED16Q9Y2X0 877 aa10.69□□□□□ -0.7
CLIP1-210ENST00000538120 LCHNA4D1U4 455 aa10.68□□□□□ -0.7
CLIP1-210ENST00000538120 A8MT66 165 aa10.68□□□□□ -0.7
CLIP1-210ENST00000538120 NPHS1O60500 1241 aa10.68□□□□□ -0.7
CLIP1-210ENST00000538120 PRAMEF12O95522 483 aa10.68□□□□□ -0.7
CLIP1-210ENST00000538120 FGBP02675 491 aa10.68□□□□□ -0.7
CLIP1-210ENST00000538120 SLC4A1P02730 911 aa10.68□□□□□ -0.7
CLIP1-210ENST00000538120 CKMP06732 381 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms