RNA–Protein interactions for RNA: ENST00000536483.1

PRKDC-207, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 834 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-207ENST00000536483 NFKBIL1Q9UBC1 381 aaPredicted RBP12.39□□□□□ -0.43
PRKDC-207ENST00000536483 ACSL6Q9UKU0 697 aa12.39□□□□□ -0.43
PRKDC-207ENST00000536483 CHKBQ9Y259 395 aa12.39□□□□□ -0.43
PRKDC-207ENST00000536483 SLC17A4Q9Y2C5 497 aa12.39□□□□□ -0.43
PRKDC-207ENST00000536483 A8MX80 341 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 APOC4-APOC2K7ER74 178 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 WISP1O95388 367 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 EPOP01588 193 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 APOC2P02655 101 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 CEACAM5P06731 702 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 LIPCP11150 499 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 GLB1P16278 677 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 PECAM1P16284 738 aaPredicted RBP12.38□□□□□ -0.43
PRKDC-207ENST00000536483 PTPN3P26045 913 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 CD86P42081 329 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 MARCKSL1P49006 195 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 CDK3Q00526 305 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 ZFP36L1Q07352 338 aaKnown RBP12.38□□□□□ -0.43
PRKDC-207ENST00000536483 AP1B1Q10567 949 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 PTPRRQ15256 657 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 PRICKLE2Q7Z3G6 844 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 PAF1Q8N7H5 531 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 KIAA1524Q8TCG1 905 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 GPBAR1Q8TDU6 330 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 LRRN4Q8WUT4 740 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 TFB1MQ8WVM0 346 aaKnown RBP12.38□□□□□ -0.43
PRKDC-207ENST00000536483 P3H4Q92791 437 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 EXTL1Q92935 676 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 SGF29Q96ES7 293 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 COX14Q96I36 57 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 SRPK1Q96SB4 655 aaKnown RBP12.38□□□□□ -0.43
PRKDC-207ENST00000536483 MLPHQ9BV36 600 aaPredicted RBP12.38□□□□□ -0.43
PRKDC-207ENST00000536483 CDH19Q9H159 772 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 ABCG8Q9H221 673 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 GLOD4Q9HC38 313 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 MAGEE1Q9HCI5 957 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 PHPT1Q9NRX4 125 aaPredicted RBP12.38□□□□□ -0.43
PRKDC-207ENST00000536483 TRNAU1APQ9NX07 287 aaKnown RBP12.38□□□□□ -0.43
PRKDC-207ENST00000536483 LRIT1Q9P2V4 623 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 SAE1Q9UBE0 346 aaPredicted RBP12.38□□□□□ -0.43
PRKDC-207ENST00000536483 APPL1Q9UKG1 709 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 RNF215Q9Y6U7 377 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 ANKRD36A6QL64 1941 aa12.38□□□□□ -0.43
PRKDC-207ENST00000536483 LRP4O75096 1905 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 PRAMEF33A0A0G2JMD5 474 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 LOC285095A0A1B0GVY8 99 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 GRID2IPA4D2P6 1211 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 CYSRT1A8MQ03 144 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 B4DGG1 531 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 NVLO15381 856 aaKnown RBP12.37□□□□□ -0.43
PRKDC-207ENST00000536483 PRAMEF10O60809 474 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 FUCA1P04066 466 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 IVLP07476 585 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 CTPS1P17812 591 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 CD68P34810 354 aaPredicted RBP12.37□□□□□ -0.43
PRKDC-207ENST00000536483 ETV5P41161 510 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 EPHB1P54762 984 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 CDK18Q07002 472 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 HLTFQ14527 1009 aaKnown RBP eCLIP12.37□□□□□ -0.43
PRKDC-207ENST00000536483 C14orf28Q4W4Y0 310 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 CERCAMQ5T4B2 595 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 TMPRSS9Q7Z410 1059 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 SPRED1Q7Z699 444 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 HEATR4Q86WZ0 1026 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 C17orf82Q86X59 251 aaPredicted RBP12.37□□□□□ -0.43
PRKDC-207ENST00000536483 ZFAND4Q86XD8 727 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 ACRBPQ8NEB7 543 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 CCL4L1Q8NHW4 92 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 DTX3LQ8TDB6 740 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 USP7Q93009 1102 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 AP2M1Q96CW1 435 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 FCRL5Q96RD9 977 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 WDR24Q96S15 920 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 ARHGAP9Q9BRR9 750 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 TMEM168Q9H0V1 697 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 DPEP2Q9H4A9 486 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 CYP4F12Q9HCS2 524 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 MOSPD1Q9UJG1 213 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 TRHDEQ9UKU6 1024 aa12.37□□□□□ -0.43
PRKDC-207ENST00000536483 PRSS38A1L453 326 aa12.36□□□□□ -0.43
PRKDC-207ENST00000536483 ZNF189O75820 626 aaPredicted RBP12.36□□□□□ -0.43
PRKDC-207ENST00000536483 CLDN7O95471 211 aa12.36□□□□□ -0.43
PRKDC-207ENST00000536483 TNNT1P13805 278 aa12.36□□□□□ -0.43
PRKDC-207ENST00000536483 PNLIPP16233 465 aa12.36□□□□□ -0.43
PRKDC-207ENST00000536483 SPINT3P49223 89 aa12.36□□□□□ -0.43
PRKDC-207ENST00000536483 MAPK10P53779 464 aa12.36□□□□□ -0.43
PRKDC-207ENST00000536483 RWDD2BP57060 319 aa12.36□□□□□ -0.43
PRKDC-207ENST00000536483 DCDC1P59894 354 aa12.36□□□□□ -0.43
PRKDC-207ENST00000536483 DYNLT1P63172 113 aa12.36□□□□□ -0.43
PRKDC-207ENST00000536483 NOMO1Q15155 1222 aa12.36□□□□□ -0.43
PRKDC-207ENST00000536483 HENMT1Q5T8I9 393 aaKnown RBP12.36□□□□□ -0.43
PRKDC-207ENST00000536483 RFLNAQ6ZTI6 216 aa12.36□□□□□ -0.43
PRKDC-207ENST00000536483 TMC3Q7Z5M5 1100 aa12.36□□□□□ -0.43
PRKDC-207ENST00000536483 VASH2Q86V25 355 aa12.36□□□□□ -0.43
PRKDC-207ENST00000536483 SLITRK4Q8IW52 837 aa12.36□□□□□ -0.43
PRKDC-207ENST00000536483 RNF10Q8N5U6 811 aaKnown RBP12.36□□□□□ -0.43
PRKDC-207ENST00000536483 LPCAT1Q8NF37 534 aa12.36□□□□□ -0.43
PRKDC-207ENST00000536483 HTR3CQ8WXA8 447 aa12.36□□□□□ -0.43
PRKDC-207ENST00000536483 EID2BQ96D98 161 aa12.36□□□□□ -0.43
PRKDC-207ENST00000536483 AGAP3Q96P47 875 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms