RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 BMP10O95393 424 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 OGNP20774 298 aaKnown RBP19.17■□□□□ 0.66
VPS28-213ENST00000530983 PSMA4P25789 261 aaKnown RBP19.17■□□□□ 0.66
VPS28-213ENST00000530983 MAGEA8P43361 318 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 APLP1P51693 650 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 ECT2LQ008S8 904 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 TMED1Q13445 227 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 TYSND1Q2T9J0 566 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 PARP15Q460N3 678 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 SETMARQ53H47 684 aaPredicted RBP19.17■□□□□ 0.66
VPS28-213ENST00000530983 LPCAT2Q7L5N7 544 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 ADGRG5Q8IZF4 528 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 GPR152Q8TDT2 470 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 UPF1Q92900 1129 aaKnown RBP eCLIP19.17■□□□□ 0.66
VPS28-213ENST00000530983 KIAA1191Q96A73 305 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 PPP1R14BQ96C90 147 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 MYRFLQ96LU7 910 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 RPRD1AQ96P16 312 aaPredicted RBP19.17■□□□□ 0.66
VPS28-213ENST00000530983 CYP2S1Q96SQ9 504 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 LIN28AQ9H9Z2 209 aaKnown RBP19.17■□□□□ 0.66
VPS28-213ENST00000530983 SEMA4BQ9NPR2 832 aaPredicted RBP19.17■□□□□ 0.66
VPS28-213ENST00000530983 GID8Q9NWU2 228 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 GPR45Q9Y5Y3 372 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 DRGXA6NNA5 263 aa19.16■□□□□ 0.66
VPS28-213ENST00000530983 IDO1P14902 403 aa19.16■□□□□ 0.66
VPS28-213ENST00000530983 COQ5Q5HYK3 327 aa19.16■□□□□ 0.66
VPS28-213ENST00000530983 PAQR3Q6TCH7 311 aa19.16■□□□□ 0.66
VPS28-213ENST00000530983 ERI1Q8IV48 349 aaKnown RBP19.16■□□□□ 0.66
VPS28-213ENST00000530983 CMTR2Q8IYT2 770 aaKnown RBP19.16■□□□□ 0.66
VPS28-213ENST00000530983 DCP1BQ8IZD4 617 aaKnown RBP19.16■□□□□ 0.66
VPS28-213ENST00000530983 GOLM1Q8NBJ4 401 aa19.16■□□□□ 0.66
VPS28-213ENST00000530983 KLHDC9Q8NEP7 349 aa19.16■□□□□ 0.66
VPS28-213ENST00000530983 C8orf48Q96LL4 319 aa19.16■□□□□ 0.66
VPS28-213ENST00000530983 ASPDHA6ND91 283 aa19.16■□□□□ 0.66
VPS28-213ENST00000530983 SUPT3HB4E1H0 165 aa19.16■□□□□ 0.66
VPS28-213ENST00000530983 PRAMEF11O60813 436 aa19.16■□□□□ 0.66
VPS28-213ENST00000530983 SUPT3HO75486 399 aa19.16■□□□□ 0.66
VPS28-213ENST00000530983 CELF2O95319 508 aaKnown RBP19.16■□□□□ 0.66
VPS28-213ENST00000530983 HMBSP08397 361 aa19.16■□□□□ 0.66
VPS28-213ENST00000530983 IL10P22301 178 aa19.16■□□□□ 0.66
VPS28-213ENST00000530983 FASP25445 335 aa19.16■□□□□ 0.66
VPS28-213ENST00000530983 OR1E1P30953 314 aa19.16■□□□□ 0.66
VPS28-213ENST00000530983 CCT8P50990 548 aa19.16■□□□□ 0.66
VPS28-213ENST00000530983 FOXM1Q08050 763 aa19.16■□□□□ 0.66
VPS28-213ENST00000530983 RPS6KA2Q15349 733 aa19.16■□□□□ 0.66
VPS28-213ENST00000530983 KCTD21Q4G0X4 260 aa19.16■□□□□ 0.66
VPS28-213ENST00000530983 ZNF598Q86UK7 904 aaKnown RBP19.16■□□□□ 0.66
VPS28-213ENST00000530983 ZNF280BQ86YH2 543 aa19.16■□□□□ 0.66
VPS28-213ENST00000530983 TTC9BQ8N6N2 239 aa19.16■□□□□ 0.66
VPS28-213ENST00000530983 TMEM125Q96AQ2 219 aa19.16■□□□□ 0.66
VPS28-213ENST00000530983 TEX37Q96LM6 180 aa19.16■□□□□ 0.66
VPS28-213ENST00000530983 ADI1Q9BV57 179 aa19.16■□□□□ 0.66
VPS28-213ENST00000530983 TRIM64CA6NLI5 447 aa19.15■□□□□ 0.66
VPS28-213ENST00000530983 COQ9O75208 318 aa19.15■□□□□ 0.66
VPS28-213ENST00000530983 ATP6V1G1O75348 118 aa19.15■□□□□ 0.66
VPS28-213ENST00000530983 OAZ2O95190 189 aa19.15■□□□□ 0.66
VPS28-213ENST00000530983 EPOP01588 193 aa19.15■□□□□ 0.66
VPS28-213ENST00000530983 PRR35P0CG20 571 aa19.15■□□□□ 0.66
VPS28-213ENST00000530983 MYF6P23409 242 aa19.15■□□□□ 0.66
VPS28-213ENST00000530983 ZFP36L2P47974 494 aaKnown RBP19.15■□□□□ 0.66
VPS28-213ENST00000530983 BTG3Q14201 252 aaPredicted RBP19.15■□□□□ 0.66
VPS28-213ENST00000530983 ZNF235Q14590 738 aa19.15■□□□□ 0.66
VPS28-213ENST00000530983 TRIP4Q15650 581 aaPredicted RBP19.15■□□□□ 0.66
VPS28-213ENST00000530983 OGFOD2Q6N063 350 aa19.15■□□□□ 0.66
VPS28-213ENST00000530983 FBXO39Q8N4B4 442 aa19.15■□□□□ 0.66
VPS28-213ENST00000530983 STAG3L4Q8TBR4 150 aa19.15■□□□□ 0.66
VPS28-213ENST00000530983 CDKN2AIPNLQ96HQ2 116 aa19.15■□□□□ 0.66
VPS28-213ENST00000530983 FUBP3Q96I24 572 aaKnown RBP eCLIP19.15■□□□□ 0.66
VPS28-213ENST00000530983 DERL2Q9GZP9 239 aa19.15■□□□□ 0.66
VPS28-213ENST00000530983 RNF112Q9ULX5 631 aa19.15■□□□□ 0.66
VPS28-213ENST00000530983 OAZ3Q9UMX2 235 aa19.15■□□□□ 0.66
VPS28-213ENST00000530983 FAM50BQ9Y247 325 aa19.15■□□□□ 0.66
VPS28-213ENST00000530983 TIMM22Q9Y584 194 aa19.15■□□□□ 0.66
VPS28-213ENST00000530983 GREB1Q4ZG55 1949 aa19.15■□□□□ 0.66
VPS28-213ENST00000530983 CHD5Q8TDI0 1954 aa19.15■□□□□ 0.66
VPS28-213ENST00000530983 UBA6A0AVT1 1052 aaPredicted RBP19.14■□□□□ 0.66
VPS28-213ENST00000530983 MTHFD1P11586 935 aaKnown RBP19.14■□□□□ 0.66
VPS28-213ENST00000530983 MERTKQ12866 999 aa19.14■□□□□ 0.66
VPS28-213ENST00000530983 TSNQ15631 228 aaKnown RBP19.14■□□□□ 0.66
VPS28-213ENST00000530983 ATP6AP1Q15904 470 aa19.14■□□□□ 0.66
VPS28-213ENST00000530983 RABL3Q5HYI8 236 aa19.14■□□□□ 0.66
VPS28-213ENST00000530983 VPS33AQ96AX1 596 aa19.14■□□□□ 0.66
VPS28-213ENST00000530983 CENPNQ96H22 339 aaPredicted RBP19.14■□□□□ 0.66
VPS28-213ENST00000530983 TRIM54Q9BYV2 358 aa19.14■□□□□ 0.66
VPS28-213ENST00000530983 OAS3Q9Y6K5 1087 aaKnown RBP19.14■□□□□ 0.66
VPS28-213ENST00000530983 ANKRD12Q6UB98 2062 aa19.14■□□□□ 0.65
VPS28-213ENST00000530983 A0A1W2PP18 115 aa19.14■□□□□ 0.65
VPS28-213ENST00000530983 ACOX3O15254 700 aa19.14■□□□□ 0.65
VPS28-213ENST00000530983 ECI2O75521 394 aa19.14■□□□□ 0.65
VPS28-213ENST00000530983 RHOBTB1O94844 696 aa19.14■□□□□ 0.65
VPS28-213ENST00000530983 RPS17P08708 135 aaKnown RBP19.14■□□□□ 0.65
VPS28-213ENST00000530983 PRDX3P30048 256 aaKnown RBP19.14■□□□□ 0.65
VPS28-213ENST00000530983 RCAN2Q14206 197 aa19.14■□□□□ 0.65
VPS28-213ENST00000530983 TAF1CQ15572 869 aaPredicted RBP19.14■□□□□ 0.65
VPS28-213ENST00000530983 SLC36A3Q495N2 470 aa19.14■□□□□ 0.65
VPS28-213ENST00000530983 SNRNP27Q8WVK2 155 aaKnown RBP19.14■□□□□ 0.65
VPS28-213ENST00000530983 TRIB3Q96RU7 358 aa19.14■□□□□ 0.65
VPS28-213ENST00000530983 MUC3BQ9H195 1237 aa19.14■□□□□ 0.65
VPS28-213ENST00000530983 PDFQ9HBH1 243 aa19.14■□□□□ 0.65
VPS28-213ENST00000530983 SYTL2Q9HCH5 934 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms