RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 CD248Q9HCU0 757 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 ITM2CQ9NQX7 267 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 ARGLU1Q9NWB6 273 aaPredicted RBP7.41□□□□□ -1.22
CD44-228ENST00000528455 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.41□□□□□ -1.22
CD44-228ENST00000528455 FBXO4Q9UKT5 387 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 SARDHQ9UL12 918 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 MUC22E2RYF6 1773 aaPredicted RBP7.41□□□□□ -1.22
CD44-228ENST00000528455 FAM237BA0A1B0GVD1 139 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 HEATR9A2RTY3 570 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 PRR23AA6NEV1 266 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 MROH6A6NGR9 719 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 C2orf81A6NN90 581 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 F5H423 210 aaPredicted RBP7.4□□□□□ -1.22
CD44-228ENST00000528455 SPAG6O75602 509 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 PIGNO95427 931 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 IL1BP01584 269 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 LMNAP02545 664 aaKnown RBP7.4□□□□□ -1.22
CD44-228ENST00000528455 UGT2B4P06133 528 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 FAM153BP0C7A2 387 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 MYBL2P10244 700 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 H2AFXP16104 143 aaPredicted RBP7.4□□□□□ -1.22
CD44-228ENST00000528455 TPH1P17752 444 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 ITGB7P26010 798 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 HNF1BP35680 557 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 HMGCLP35914 325 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 WASP42768 502 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 COPAP53621 1224 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 RPS14P62263 151 aaKnown RBP7.4□□□□□ -1.22
CD44-228ENST00000528455 CSTF1Q05048 431 aaKnown RBP7.4□□□□□ -1.22
CD44-228ENST00000528455 ELP6Q0PNE2 266 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 FRG1Q14331 258 aaKnown RBP7.4□□□□□ -1.22
CD44-228ENST00000528455 TAF1AQ15573 450 aaPredicted RBP7.4□□□□□ -1.22
CD44-228ENST00000528455 CST6Q15828 149 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 CDKN3Q16667 212 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 FAM153CQ494X1 144 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 CCDC38Q502W7 563 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 CFAP58Q5T655 872 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 ZNF776Q68DI1 518 aaPredicted RBP7.4□□□□□ -1.22
CD44-228ENST00000528455 NEK5Q6P3R8 708 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 PKN3Q6P5Z2 889 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 FBXL19Q6PCT2 694 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 C3orf62Q6ZUJ4 267 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 USP30Q70CQ3 517 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 ERN2Q76MJ5 926 aaKnown RBP7.4□□□□□ -1.22
CD44-228ENST00000528455 TMC3Q7Z5M5 1100 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 TMPRSS6Q8IU80 811 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 MMAAQ8IVH4 418 aaKnown RBP7.4□□□□□ -1.22
CD44-228ENST00000528455 MAML2Q8IZL2 1156 aaPredicted RBP7.4□□□□□ -1.22
CD44-228ENST00000528455 SLC25A41Q8N5S1 370 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 ZNF366Q8N895 744 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 PDCD6IPQ8WUM4 868 aaKnown RBP7.4□□□□□ -1.22
CD44-228ENST00000528455 FAM131CQ96AQ9 280 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 SGSM3Q96HU1 749 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 MCCC1Q96RQ3 725 aaPredicted RBP7.4□□□□□ -1.22
CD44-228ENST00000528455 APOL2Q9BQE5 337 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 PABPC3Q9H361 631 aaKnown RBP7.4□□□□□ -1.22
CD44-228ENST00000528455 MTG2Q9H4K7 406 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 ARFGAP3Q9NP61 516 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 DYRK4Q9NR20 520 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 KCTD5Q9NXV2 234 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 SAMD15Q9P1V8 674 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 FAM169AQ9Y6X4 670 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 R4GN57 208 aa7.4□□□□□ -1.22
CD44-228ENST00000528455 FAM186AA6NE01 2351 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 UQCRHLA0A096LP55 91 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 RGSL1A5PLK6 1076 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 UPK3BL1B0FP48 263 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 UPK3BL2E5RIL1 263 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 KPNA3O00505 521 aaPredicted RBP7.39□□□□□ -1.23
CD44-228ENST00000528455 DYNC1I1O14576 645 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 SLC7A4O43246 635 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 TSPAN6O43657 245 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 LDB2O43679 373 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 AP1G1O43747 822 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 USP1O94782 785 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 ALDH1A2O94788 518 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 CPP00450 1065 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 DNTTP04053 509 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 UQCRHP07919 91 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 CYP2A6P11509 494 aaPredicted RBP7.39□□□□□ -1.23
CD44-228ENST00000528455 ZNF30P17039 623 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 LPOP22079 712 aaPredicted RBP7.39□□□□□ -1.23
CD44-228ENST00000528455 XPAP23025 273 aaPredicted RBP7.39□□□□□ -1.23
CD44-228ENST00000528455 MGAT1P26572 445 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 HADHAP40939 763 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 ELK3P41970 407 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 GATA4P43694 442 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 LIG3P49916 1009 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 CCR3P51677 355 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 PMS2P54278 862 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 SESN2P58004 480 aaPredicted RBP7.39□□□□□ -1.23
CD44-228ENST00000528455 MTAPQ13126 283 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 OLIG2Q13516 323 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 KYNUQ16719 465 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 BBS9Q3SYG4 887 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 TMEM52BQ4KMG9 183 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 SPANXN3Q5MJ09 141 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 BEND6Q5SZJ8 279 aaPredicted RBP7.39□□□□□ -1.23
CD44-228ENST00000528455 ZDHHC20Q5W0Z9 365 aa7.39□□□□□ -1.23
CD44-228ENST00000528455 KIAA1211LQ6NV74 962 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms