RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 OTUD3Q5T2D3 398 aaPredicted RBP3.88□□□□□ -1.79
CD44-217ENST00000525348 GORABQ5T7V8 394 aa3.88□□□□□ -1.79
CD44-217ENST00000525348 FRG2Q64ET8 278 aa3.88□□□□□ -1.79
CD44-217ENST00000525348 TRNP1Q6NT89 227 aa3.88□□□□□ -1.79
CD44-217ENST00000525348 C19orf48Q6RUI8 117 aa3.88□□□□□ -1.79
CD44-217ENST00000525348 CLEC4GQ6UXB4 293 aa3.88□□□□□ -1.79
CD44-217ENST00000525348 ATG9AQ7Z3C6 839 aa3.88□□□□□ -1.79
CD44-217ENST00000525348 ARMC8Q8IUR7 673 aa3.88□□□□□ -1.79
CD44-217ENST00000525348 SLC24A4Q8NFF2 622 aa3.88□□□□□ -1.79
CD44-217ENST00000525348 OR14L1PQ8NHC6 308 aa3.88□□□□□ -1.79
CD44-217ENST00000525348 SYT17Q9BSW7 474 aa3.88□□□□□ -1.79
CD44-217ENST00000525348 LTB4R2Q9NPC1 389 aa3.88□□□□□ -1.79
CD44-217ENST00000525348 TAAR2Q9P1P5 351 aa3.88□□□□□ -1.79
CD44-217ENST00000525348 POU2F3Q9UKI9 436 aa3.88□□□□□ -1.79
CD44-217ENST00000525348 DLGAP4Q9Y2H0 992 aa3.88□□□□□ -1.79
CD44-217ENST00000525348 TNFSF12-TNFSF13A0A0A6YY99 330 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 FAM172BPA6NC97 362 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 PRSS47A8MTI9 375 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 CAPN9O14815 690 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 SPINT2O43291 252 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 FGF17O60258 216 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 PAGE4O60829 102 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 NKX2-2O95096 273 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 ATP1A1P05023 1023 aaKnown RBP3.87□□□□□ -1.79
CD44-217ENST00000525348 UBL4AP11441 157 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 FGF5P12034 268 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 GNL1P36915 607 aaPredicted RBP3.87□□□□□ -1.79
CD44-217ENST00000525348 APOBEC1P41238 236 aaKnown RBP3.87□□□□□ -1.79
CD44-217ENST00000525348 FMO5P49326 533 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 F2RL1P55085 397 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 CLDN20P56880 219 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 PITX1P78337 314 aaPredicted RBP3.87□□□□□ -1.79
CD44-217ENST00000525348 PHEXP78562 749 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 FOXM1Q08050 763 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 TMEM115Q12893 351 aaPredicted RBP3.87□□□□□ -1.79
CD44-217ENST00000525348 DMP1Q13316 513 aaPredicted RBP3.87□□□□□ -1.79
CD44-217ENST00000525348 DECR1Q16698 335 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 SIGIRRQ6IA17 410 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 TSSK4Q6SA08 328 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 NFE4Q86UQ8 179 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 NBPF5PQ86XG9 351 aaPredicted RBP3.87□□□□□ -1.79
CD44-217ENST00000525348 TSPYL6Q8N831 410 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 IL17REQ8NFR9 667 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 METTL6Q8TCB7 284 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 KCNG4Q8TDN1 519 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 SLC38A5Q8WUX1 472 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 APBB2Q92870 758 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 PIGTQ969N2 578 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 MMABQ96EY8 250 aaPredicted RBP3.87□□□□□ -1.79
CD44-217ENST00000525348 RRNAD1Q96FB5 475 aaKnown RBP3.87□□□□□ -1.79
CD44-217ENST00000525348 PCGF1Q9BSM1 259 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 STRA6Q9BX79 667 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 PDCL3Q9H2J4 239 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 PRKRIP1Q9H875 184 aaPredicted RBP3.87□□□□□ -1.79
CD44-217ENST00000525348 SLC28A3Q9HAS3 691 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 PREBQ9HCU5 417 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 ZNF334Q9HCZ1 680 aaPredicted RBP3.87□□□□□ -1.79
CD44-217ENST00000525348 TAS2R10Q9NYW0 307 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 RAI14Q9P0K7 980 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 CNOT8Q9UFF9 292 aaKnown RBP3.87□□□□□ -1.79
CD44-217ENST00000525348 PTPRCP08575 1304 aa3.87□□□□□ -1.79
CD44-217ENST00000525348 CTAGE9A4FU28 777 aa3.86□□□□□ -1.79
CD44-217ENST00000525348 EPB41L2O43491 1005 aaKnown RBP3.86□□□□□ -1.79
CD44-217ENST00000525348 CTAGE8P0CG41 777 aa3.86□□□□□ -1.79
CD44-217ENST00000525348 NR1D1P20393 614 aa3.86□□□□□ -1.79
CD44-217ENST00000525348 PBX3P40426 434 aa3.86□□□□□ -1.79
CD44-217ENST00000525348 IL15P40933 162 aaPredicted RBP3.86□□□□□ -1.79
CD44-217ENST00000525348 FASLGP48023 281 aa3.86□□□□□ -1.79
CD44-217ENST00000525348 OLR1P78380 273 aa3.86□□□□□ -1.79
CD44-217ENST00000525348 MAP2K1Q02750 393 aaPredicted RBP3.86□□□□□ -1.79
CD44-217ENST00000525348 OLIG2Q13516 323 aa3.86□□□□□ -1.79
CD44-217ENST00000525348 GTF2H2Q13888 395 aa3.86□□□□□ -1.79
CD44-217ENST00000525348 ZNF234Q14588 700 aa3.86□□□□□ -1.79
CD44-217ENST00000525348 MRGPRG-AS1Q2M3A8 158 aa3.86□□□□□ -1.79
CD44-217ENST00000525348 ACCSLQ4AC99 568 aa3.86□□□□□ -1.79
CD44-217ENST00000525348 LCE1EQ5T753 118 aa3.86□□□□□ -1.79
CD44-217ENST00000525348 GTF2H2CQ6P1K8 395 aa3.86□□□□□ -1.79
CD44-217ENST00000525348 ZNF852Q6ZMS4 543 aa3.86□□□□□ -1.79
CD44-217ENST00000525348 SLC26A9Q7LBE3 791 aa3.86□□□□□ -1.79
CD44-217ENST00000525348 TRMT1LQ7Z2T5 733 aaKnown RBP3.86□□□□□ -1.79
CD44-217ENST00000525348 R3HCC1LQ7Z5L2 792 aaKnown RBP3.86□□□□□ -1.79
CD44-217ENST00000525348 EPHX4Q8IUS5 362 aa3.86□□□□□ -1.79
CD44-217ENST00000525348 CTAGE4Q8IX94 777 aa3.86□□□□□ -1.79
CD44-217ENST00000525348 KLHDC8BQ8IXV7 354 aa3.86□□□□□ -1.79
CD44-217ENST00000525348 DMBX1Q8NFW5 382 aa3.86□□□□□ -1.79
CD44-217ENST00000525348 SLC44A1Q8WWI5 657 aa3.86□□□□□ -1.79
CD44-217ENST00000525348 TAAR8Q969N4 342 aa3.86□□□□□ -1.79
CD44-217ENST00000525348 INTS12Q96CB8 462 aaKnown RBP3.86□□□□□ -1.79
CD44-217ENST00000525348 TBATAQ96M53 351 aa3.86□□□□□ -1.79
CD44-217ENST00000525348 UBA5Q9GZZ9 404 aa3.86□□□□□ -1.79
CD44-217ENST00000525348 PGAP2Q9UHJ9 254 aa3.86□□□□□ -1.79
CD44-217ENST00000525348 PNMA2Q9UL42 364 aa3.86□□□□□ -1.79
CD44-217ENST00000525348 ACSL5Q9ULC5 683 aa3.86□□□□□ -1.79
CD44-217ENST00000525348 A0A1W2PPH5 198 aa3.85□□□□□ -1.79
CD44-217ENST00000525348 C1orf226A1L170 272 aa3.85□□□□□ -1.79
CD44-217ENST00000525348 WDR1O75083 606 aa3.85□□□□□ -1.79
CD44-217ENST00000525348 KRT10P13645 584 aa3.85□□□□□ -1.79
CD44-217ENST00000525348 ZNF182P17025 639 aaPredicted RBP3.85□□□□□ -1.79
CD44-217ENST00000525348 CASP6P55212 293 aa3.85□□□□□ -1.79
CD44-217ENST00000525348 FRG1Q14331 258 aaKnown RBP3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms