RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 LEMD2Q8NC56 503 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 FAM45AQ8TCE6 357 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 CSGALNACT1Q8TDX6 532 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 TRUB1Q8WWH5 349 aaKnown RBP13.09□□□□□ -0.31
TCOF1-213ENST00000514442 ELMO1Q92556 727 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 OXCT2Q9BYC2 517 aaPredicted RBP13.09□□□□□ -0.31
TCOF1-213ENST00000514442 ZCCHC2Q9C0B9 1178 aaKnown RBP13.09□□□□□ -0.31
TCOF1-213ENST00000514442 ACSS2Q9NR19 701 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 ARHGEF4Q9NR80 690 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 FAM189A1O60320 539 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 AOC2O75106 756 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 HSMCR30P0CW71 290 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 MLNP12872 115 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 MAGP20916 626 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 NR4A1P22736 598 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 CORO1AP31146 461 aaKnown RBP13.09□□□□□ -0.31
TCOF1-213ENST00000514442 RPS9P46781 194 aaKnown RBP13.09□□□□□ -0.31
TCOF1-213ENST00000514442 CLCN5P51795 746 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 TEX44Q53QW1 395 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 BORAQ6PGQ7 559 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 AFTPHQ6ULP2 937 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 SCIMPQ6UWF3 145 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 STX19Q8N4C7 294 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 KBTBD8Q8NFY9 601 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 CENPNQ96H22 339 aaPredicted RBP13.09□□□□□ -0.31
TCOF1-213ENST00000514442 TWNKQ96RR1 684 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 FAM126AQ9BYI3 521 aaPredicted RBP13.09□□□□□ -0.31
TCOF1-213ENST00000514442 AGO3Q9H9G7 860 aaKnown RBP13.09□□□□□ -0.31
TCOF1-213ENST00000514442 CD320Q9NPF0 282 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 XPR1Q9UBH6 696 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 MYH10P35580 1976 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 CCL16O15467 120 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 ZBTB14O43829 449 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 SLC7A1P30825 629 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 PPM1AP35813 382 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 MAPK9P45984 424 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 DSG4Q86SJ6 1040 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 ARMC8Q8IUR7 673 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 TBC1D21Q8IYX1 336 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 STK40Q8N2I9 435 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 PACRGLQ8N7B6 248 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 FAM156AQ8NDB6 213 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 BTN2A3PQ96KV6 586 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 CLEC4MQ9H2X3 399 aaPredicted RBP13.09□□□□□ -0.31
TCOF1-213ENST00000514442 KLQ9UEF7 1012 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 CNOT6Q9ULM6 557 aaKnown RBP13.09□□□□□ -0.31
TCOF1-213ENST00000514442 NR2E3Q9Y5X4 410 aa13.09□□□□□ -0.31
TCOF1-213ENST00000514442 YJEFN3A6XGL0 299 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 NEDD8-MDP1E9PL57 170 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 PLIN3O60664 434 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 LRIG2O94898 1065 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 GLUD1P00367 558 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 AIF1P55008 147 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 TRAP1Q12931 704 aaKnown RBP13.08□□□□□ -0.32
TCOF1-213ENST00000514442 MSLNQ13421 630 aaPredicted RBP13.08□□□□□ -0.32
TCOF1-213ENST00000514442 KLHL12Q53G59 568 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 VARS2Q5ST30 1063 aaKnown RBP13.08□□□□□ -0.32
TCOF1-213ENST00000514442 FAM151BQ6UXP7 276 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 SERPINA13PQ6UXR4 307 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 STAG3L4Q8TBR4 150 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 STARD8Q92502 1023 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 NCSTNQ92542 709 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 ACBD6Q9BR61 282 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 ACE2Q9BYF1 805 aaPredicted RBP13.08□□□□□ -0.32
TCOF1-213ENST00000514442 YTHDF1Q9BYJ9 559 aaKnown RBP13.08□□□□□ -0.32
TCOF1-213ENST00000514442 IRF2BPLQ9H1B7 796 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 ABCG8Q9H221 673 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 CRNNQ9UBG3 495 aaPredicted RBP13.08□□□□□ -0.32
TCOF1-213ENST00000514442 EBF1Q9UH73 591 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 CCDC154A6NI56 674 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 H3BNH8 94 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 PARNO95453 639 aaKnown RBP13.08□□□□□ -0.32
TCOF1-213ENST00000514442 HNRNPLP14866 589 aaKnown RBP eCLIP13.08□□□□□ -0.32
TCOF1-213ENST00000514442 ITIH1P19827 911 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 DGKAP23743 735 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 CCT3P49368 545 aaKnown RBP13.08□□□□□ -0.32
TCOF1-213ENST00000514442 BLVRAP53004 296 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 GDF10P55107 478 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 TIGD5Q53EQ6 642 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 LINGO4Q6UY18 593 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 LRRC49Q8IUZ0 686 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 FAM126BQ8IXS8 530 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 SLAIN1Q8ND83 568 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 UPF1Q92900 1129 aaKnown RBP eCLIP13.08□□□□□ -0.32
TCOF1-213ENST00000514442 EMID1Q96A84 441 aaPredicted RBP13.08□□□□□ -0.32
TCOF1-213ENST00000514442 RIBC2Q9H4K1 309 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 TRPV5Q9NQA5 729 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 EFR3BQ9Y2G0 817 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 TOR1BO14657 336 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 FFAR3O14843 346 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 GPR42O15529 346 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 HCRTO43612 131 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 CCT8P50990 548 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 TUBA3CQ13748 450 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 TCEAL1Q15170 157 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 LSM12Q3MHD2 195 aaKnown RBP13.08□□□□□ -0.32
TCOF1-213ENST00000514442 SPATA22Q8NHS9 363 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 SCAMP5Q8TAC9 235 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 FAR1Q8WVX9 515 aa13.08□□□□□ -0.32
TCOF1-213ENST00000514442 CD101Q93033 1021 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms