RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 SNRNP25Q9BV90 132 aaKnown RBP20.13■□□□□ 0.81
SQSTM1-215ENST00000514093 CNOT8Q9UFF9 292 aaKnown RBP20.13■□□□□ 0.81
SQSTM1-215ENST00000514093 RP1L1Q8IWN7 2480 aaPredicted RBP20.13■□□□□ 0.81
SQSTM1-215ENST00000514093 DNAJC6O75061 913 aa20.12■□□□□ 0.81
SQSTM1-215ENST00000514093 PEX11BO96011 259 aa20.12■□□□□ 0.81
SQSTM1-215ENST00000514093 PDHA1P08559 390 aa20.12■□□□□ 0.81
SQSTM1-215ENST00000514093 EPHA4P54764 986 aa20.12■□□□□ 0.81
SQSTM1-215ENST00000514093 PTSQ03393 145 aa20.12■□□□□ 0.81
SQSTM1-215ENST00000514093 DPCR1Q3MIW9 517 aa20.12■□□□□ 0.81
SQSTM1-215ENST00000514093 TCP11X2Q5H9J9 407 aa20.12■□□□□ 0.81
SQSTM1-215ENST00000514093 USP45Q70EL2 814 aa20.12■□□□□ 0.81
SQSTM1-215ENST00000514093 PLXDC1Q8IUK5 500 aa20.12■□□□□ 0.81
SQSTM1-215ENST00000514093 RASGRP3Q8IV61 690 aa20.12■□□□□ 0.81
SQSTM1-215ENST00000514093 PIH1D2Q8WWB5 315 aa20.12■□□□□ 0.81
SQSTM1-215ENST00000514093 COX14Q96I36 57 aa20.12■□□□□ 0.81
SQSTM1-215ENST00000514093 ZNF599Q96NL3 588 aa20.12■□□□□ 0.81
SQSTM1-215ENST00000514093 RIOK2Q9BVS4 552 aaKnown RBP20.12■□□□□ 0.81
SQSTM1-215ENST00000514093 CASS4Q9NQ75 786 aa20.12■□□□□ 0.81
SQSTM1-215ENST00000514093 RCOR3Q9P2K3 495 aaPredicted RBP20.12■□□□□ 0.81
SQSTM1-215ENST00000514093 CREG1O75629 220 aa20.11■□□□□ 0.81
SQSTM1-215ENST00000514093 NDUFA10O95299 355 aa20.11■□□□□ 0.81
SQSTM1-215ENST00000514093 ACP5P13686 325 aa20.11■□□□□ 0.81
SQSTM1-215ENST00000514093 TYRP1P17643 537 aa20.11■□□□□ 0.81
SQSTM1-215ENST00000514093 PSMA2P25787 234 aa20.11■□□□□ 0.81
SQSTM1-215ENST00000514093 SYCP1Q15431 976 aa20.11■□□□□ 0.81
SQSTM1-215ENST00000514093 EIF2S3LQ2VIR3 472 aaKnown RBP20.11■□□□□ 0.81
SQSTM1-215ENST00000514093 ARMC12Q5T9G4 340 aa20.11■□□□□ 0.81
SQSTM1-215ENST00000514093 EXD1Q8NHP7 514 aa20.11■□□□□ 0.81
SQSTM1-215ENST00000514093 C9orf72Q96LT7 481 aa20.11■□□□□ 0.81
SQSTM1-215ENST00000514093 LDHAL6BQ9BYZ2 381 aaPredicted RBP20.11■□□□□ 0.81
SQSTM1-215ENST00000514093 OGFRQ9NZT2 677 aa20.11■□□□□ 0.81
SQSTM1-215ENST00000514093 CWC15Q9P013 229 aaKnown RBP20.11■□□□□ 0.81
SQSTM1-215ENST00000514093 CPNE7Q9UBL6 633 aa20.11■□□□□ 0.81
SQSTM1-215ENST00000514093 LNPEPQ9UIQ6 1025 aa20.11■□□□□ 0.81
SQSTM1-215ENST00000514093 KCND3Q9UK17 655 aa20.11■□□□□ 0.81
SQSTM1-215ENST00000514093 CENPEQ02224 2701 aa20.11■□□□□ 0.81
SQSTM1-215ENST00000514093 MN1Q10571 1320 aaPredicted RBP20.1■□□□□ 0.81
SQSTM1-215ENST00000514093 A6NCN8 305 aa20.1■□□□□ 0.81
SQSTM1-215ENST00000514093 ANKRD34CP0C6C1 535 aa20.1■□□□□ 0.81
SQSTM1-215ENST00000514093 SEMA5AQ13591 1074 aa20.1■□□□□ 0.81
SQSTM1-215ENST00000514093 TGM7Q96PF1 710 aa20.1■□□□□ 0.81
SQSTM1-215ENST00000514093 RUFY1Q96T51 708 aa20.1■□□□□ 0.81
SQSTM1-215ENST00000514093 MGME1Q9BQP7 344 aa20.1■□□□□ 0.81
SQSTM1-215ENST00000514093 MAP4K5Q9Y4K4 846 aa20.1■□□□□ 0.81
SQSTM1-215ENST00000514093 C9P02748 559 aa20.09■□□□□ 0.81
SQSTM1-215ENST00000514093 CCNYL3P0C7X3 344 aa20.09■□□□□ 0.81
SQSTM1-215ENST00000514093 F3P13726 295 aa20.09■□□□□ 0.81
SQSTM1-215ENST00000514093 DESP17661 470 aa20.09■□□□□ 0.81
SQSTM1-215ENST00000514093 CASP14P31944 242 aa20.09■□□□□ 0.81
SQSTM1-215ENST00000514093 HSPA9P38646 679 aaKnown RBP20.09■□□□□ 0.81
SQSTM1-215ENST00000514093 LEPRP48357 1165 aaKnown RBP20.09■□□□□ 0.81
SQSTM1-215ENST00000514093 CHAF1BQ13112 559 aa20.09■□□□□ 0.81
SQSTM1-215ENST00000514093 MRPL49Q13405 166 aaKnown RBP20.09■□□□□ 0.81
SQSTM1-215ENST00000514093 DNASE1L3Q13609 305 aa20.09■□□□□ 0.81
SQSTM1-215ENST00000514093 PRR30Q53SZ7 412 aaPredicted RBP20.09■□□□□ 0.81
SQSTM1-215ENST00000514093 LYSMD3Q7Z3D4 306 aa20.09■□□□□ 0.81
SQSTM1-215ENST00000514093 MCOLN2Q8IZK6 566 aa20.09■□□□□ 0.81
SQSTM1-215ENST00000514093 CT55Q8WUE5 264 aa20.09■□□□□ 0.81
SQSTM1-215ENST00000514093 AGPAT1Q99943 283 aa20.09■□□□□ 0.81
SQSTM1-215ENST00000514093 HERPUD2Q9BSE4 406 aa20.09■□□□□ 0.81
SQSTM1-215ENST00000514093 CUEDC1Q9NWM3 386 aaPredicted RBP20.09■□□□□ 0.81
SQSTM1-215ENST00000514093 CNOT6Q9ULM6 557 aaKnown RBP20.09■□□□□ 0.81
SQSTM1-215ENST00000514093 PPIL1Q9Y3C6 166 aa20.09■□□□□ 0.81
SQSTM1-215ENST00000514093 EIF3CLB5ME19 914 aaKnown RBP20.08■□□□□ 0.81
SQSTM1-215ENST00000514093 DPYSQ14117 519 aa20.08■□□□□ 0.81
SQSTM1-215ENST00000514093 CPZQ66K79 652 aa20.08■□□□□ 0.81
SQSTM1-215ENST00000514093 CYP4V2Q6ZWL3 525 aaPredicted RBP20.08■□□□□ 0.81
SQSTM1-215ENST00000514093 APLFQ8IW19 511 aaPredicted RBP20.08■□□□□ 0.81
SQSTM1-215ENST00000514093 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP20.08■□□□□ 0.81
SQSTM1-215ENST00000514093 PLEKHG4BQ96PX9 1271 aa20.08■□□□□ 0.81
SQSTM1-215ENST00000514093 EIF3CQ99613 913 aaKnown RBP20.08■□□□□ 0.81
SQSTM1-215ENST00000514093 EPB41L1Q9H4G0 881 aa20.08■□□□□ 0.81
SQSTM1-215ENST00000514093 ETNK2Q9NVF9 386 aa20.08■□□□□ 0.81
SQSTM1-215ENST00000514093 SCHIP1Q9P0W5 487 aaPredicted RBP20.08■□□□□ 0.81
SQSTM1-215ENST00000514093 LUZP4Q9P127 313 aa20.08■□□□□ 0.81
SQSTM1-215ENST00000514093 PADI1Q9ULC6 663 aa20.08■□□□□ 0.81
SQSTM1-215ENST00000514093 SLC30A1Q9Y6M5 507 aa20.08■□□□□ 0.81
SQSTM1-215ENST00000514093 ESPL1Q14674 2120 aa20.08■□□□□ 0.8
SQSTM1-215ENST00000514093 SHANK1Q9Y566 2161 aa20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 KIR2DS5A0A0G2JLQ3 304 aa20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 A0A0G2JNG1 304 aa20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 KIR2DS3K7RE56 304 aa20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 ATMINO43313 823 aaPredicted RBP20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 KIF1CO43896 1103 aaKnown RBP20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 MAFKO60675 156 aa20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 SPAG6O75602 509 aa20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 RASSF9O75901 435 aa20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 AMD1P17707 334 aa20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 AMPD1P23109 780 aa20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 EEF1GP26641 437 aaKnown RBP20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 MIPP30301 263 aa20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 DCTP40126 519 aa20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 CCL11P51671 97 aa20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 PGDP52209 483 aa20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 MAMLD1Q13495 774 aa20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 KIR2DS5Q14953 304 aa20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 ACAD10Q6JQN1 1059 aa20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 ZNF765Q7L2R6 523 aa20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 NLRP8Q86W28 1048 aa20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 BBS5Q8N3I7 341 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms