RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 BPIP17213 487 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 CTPS1P17812 591 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 TFEBP19484 476 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 ITGALP20701 1170 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 SERPINB3P29508 390 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 FMO4P31512 558 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 PBX2P40425 430 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 RECQLP46063 649 aaPredicted RBP8.32□□□□□ -1.08
RNF4-220ENST00000513578 GLRBP48167 497 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 LIG3P49916 1009 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 IDH3AP50213 366 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 RPL14P50914 215 aaKnown RBP8.32□□□□□ -1.08
RNF4-220ENST00000513578 NAGLUP54802 743 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 ZBTB16Q05516 673 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 SF3A3Q12874 501 aaKnown RBP eCLIP8.32□□□□□ -1.08
RNF4-220ENST00000513578 CBX2Q14781 532 aaPredicted RBP8.32□□□□□ -1.08
RNF4-220ENST00000513578 PTPRNQ16849 979 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 GEN1Q17RS7 908 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 GAB4Q2WGN9 574 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 ZRANB3Q5FWF4 1079 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 CTSL3PQ5NE16 218 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 PPP2R2DQ66LE6 453 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 TMC5Q6UXY8 1006 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 RBFAQ8N0V3 343 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 LSMEM2Q8N112 164 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 RYBPQ8N488 228 aaPredicted RBP8.32□□□□□ -1.08
RNF4-220ENST00000513578 C12orf76Q8N812 135 aaPredicted RBP8.32□□□□□ -1.08
RNF4-220ENST00000513578 TXNDC5Q8NBS9 432 aaKnown RBP8.32□□□□□ -1.08
RNF4-220ENST00000513578 TTC16Q8NEE8 873 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 OR6K2Q8NGY2 324 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 STAG3L4Q8TBR4 150 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 ING5Q8WYH8 240 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 FGF13Q92913 245 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 ULK4Q96C45 1275 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 NSL1Q96IY1 281 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 FAR2Q96K12 515 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 ATOH8Q96SQ7 321 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 CCDC28BQ9BUN5 200 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 C1QTNF3Q9BXJ4 246 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 LRMDAQ9H2I8 198 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 RASSF4Q9H2L5 321 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 NKX2-4Q9H2Z4 354 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 BRD9Q9H8M2 597 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 EML4Q9HC35 981 aaKnown RBP8.32□□□□□ -1.08
RNF4-220ENST00000513578 IL26Q9NPH9 171 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 PNPOQ9NVS9 261 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 THG1LQ9NWX6 298 aaKnown RBP8.32□□□□□ -1.08
RNF4-220ENST00000513578 DHRS7Q9Y394 339 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 NUMBLQ9Y6R0 609 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 CAPN7Q9Y6W3 813 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 WASF2Q9Y6W5 498 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 SPTBN5Q9NRC6 3674 aaKnown RBP8.32□□□□□ -1.08
RNF4-220ENST00000513578 LRRK1Q38SD2 2015 aa8.32□□□□□ -1.08
RNF4-220ENST00000513578 IGLV3-16A0A075B6K0 115 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 UBA6A0AVT1 1052 aaPredicted RBP8.31□□□□□ -1.08
RNF4-220ENST00000513578 NPIPB15A6NHN6 443 aaPredicted RBP8.31□□□□□ -1.08
RNF4-220ENST00000513578 SYCE1LA8MT33 242 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 STX16-NPEPL1H3BU86 382 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 EIF3FO00303 357 aaPredicted RBP8.31□□□□□ -1.08
RNF4-220ENST00000513578 STX16O14662 325 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 SLC22A2O15244 555 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 HDAC3O15379 428 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 KERAO60938 352 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 SMIM24O75264 130 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 TULP3O75386 442 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 RASSF9O75901 435 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 CSPG5O95196 566 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 CLDN7O95471 211 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 PRAMEF1O95521 474 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 PRSS56P0CW18 603 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 MTHFD2P13995 350 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 NQO1P15559 274 aaKnown RBP8.31□□□□□ -1.08
RNF4-220ENST00000513578 CALB2P22676 271 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 SP100P23497 879 aaPredicted RBP8.31□□□□□ -1.08
RNF4-220ENST00000513578 FCARP24071 287 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 ACRV1P26436 265 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 PTPN4P29074 926 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 ADSLP30566 484 aaPredicted RBP8.31□□□□□ -1.08
RNF4-220ENST00000513578 GKP32189 559 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 VIPR1P32241 457 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 EIF2DP41214 584 aaKnown RBP8.31□□□□□ -1.08
RNF4-220ENST00000513578 CDKN1CP49918 316 aaPredicted RBP8.31□□□□□ -1.08
RNF4-220ENST00000513578 PGGT1BP53609 377 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 DCDC1P59894 354 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 SATB1Q01826 763 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 FCHO2Q0JRZ9 810 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 NFATC2Q13469 925 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 ACCSLQ4AC99 568 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 ARL13AQ5H913 290 aaPredicted RBP8.31□□□□□ -1.08
RNF4-220ENST00000513578 SH2D4BQ5SQS7 431 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 ANKRD54Q6NXT1 300 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 PAQR3Q6TCH7 311 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 MACC1Q6ZN28 852 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 TRIM67Q6ZTA4 783 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 MAVSQ7Z434 540 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 SERPINA9Q86WD7 417 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 HOMEZQ8IX15 550 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 NXPE1Q8N323 547 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 PHTF2Q8N3S3 785 aa8.31□□□□□ -1.08
RNF4-220ENST00000513578 ZNF781Q8N8C0 355 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms