RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 MRPS30Q9NP92 439 aaKnown RBP4.23□□□□□ -1.73
VCAN-209ENST00000513016 ADAM21Q9UKJ8 722 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 ADGRA3Q8IWK6 1321 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 IGKV6D-41A0A0C4DH26 115 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 MSI1O43347 362 aaKnown RBP4.23□□□□□ -1.73
VCAN-209ENST00000513016 FKBP6O75344 327 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 MFN2O95140 757 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 IQCF3P0C7M6 154 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 ALDH4A1P30038 563 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 GSTM5P46439 218 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 UGT2B15P54855 530 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 EIF4HQ15056 248 aaKnown RBP4.23□□□□□ -1.73
VCAN-209ENST00000513016 FAM214AQ32MH5 1076 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 INO80DQ53TQ3 878 aaPredicted RBP4.23□□□□□ -1.73
VCAN-209ENST00000513016 ANO7Q6IWH7 933 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 ARMCX6Q7L4S7 300 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 TMEM156Q8N614 296 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 OR4K2Q8NGD2 314 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 NSMCE3Q96MG7 304 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 ZIM3Q96PE6 472 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 SERHL2Q9H4I8 314 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 SERHLQ9NQF3 203 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 SCML1Q9UN30 329 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 TPRKBQ9Y3C4 175 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 TPD52L2O43399 206 aaKnown RBP4.23□□□□□ -1.73
VCAN-209ENST00000513016 KLF8O95600 359 aaPredicted RBP4.23□□□□□ -1.73
VCAN-209ENST00000513016 CSF2RAP15509 400 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 CALB2P22676 271 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 TM4SF4P48230 202 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 RPL14P50914 215 aaKnown RBP4.23□□□□□ -1.73
VCAN-209ENST00000513016 PTSQ03393 145 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 ARSIQ5FYB1 569 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 TBCELQ5QJ74 424 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 SULT1C3Q6IMI6 304 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 CES3Q6UWW8 571 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 RIPOR1Q6ZS17 1223 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 SPATA19Q7Z5L4 167 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 SH3RF1Q7Z6J0 888 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 OR7D4Q8NG98 312 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 HDAC7Q8WUI4 952 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 LRIG1Q96JA1 1093 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 CEP295NLQ96MC4 621 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 ZSCAN5AQ9BUG6 496 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 ACAT2Q9BWD1 397 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 ZNF717Q9BY31 904 aaPredicted RBP4.23□□□□□ -1.73
VCAN-209ENST00000513016 PDE7BQ9NP56 450 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 ITM2CQ9NQX7 267 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 SIRPGQ9P1W8 387 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 ZNF229Q9UJW7 825 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 SNX7Q9UNH6 387 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 KIF20BQ96Q89 1820 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 BTNL10A8MVZ5 291 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 TISP43B9A030 160 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 MYL12BO14950 172 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 TOP3BO95985 862 aaKnown RBP4.23□□□□□ -1.73
VCAN-209ENST00000513016 ESR1P03372 595 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 LYNP07948 512 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 CD63P08962 238 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 LAMP2P13473 410 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 JUPP14923 745 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 UGT1A1P22309 533 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 CPN2P22792 545 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 CSKP41240 450 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 PTGER3P43115 390 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 RPS15P62841 145 aaKnown RBP4.23□□□□□ -1.73
VCAN-209ENST00000513016 PRR5P85299 388 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 GUCY1A3Q02108 690 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 HEPACAMQ14CZ8 416 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 TAF1AQ15573 450 aaPredicted RBP4.23□□□□□ -1.73
VCAN-209ENST00000513016 EARS2Q5JPH6 523 aaKnown RBP4.23□□□□□ -1.73
VCAN-209ENST00000513016 PMF1Q6P1K2 205 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 MMAAQ8IVH4 418 aaKnown RBP4.23□□□□□ -1.73
VCAN-209ENST00000513016 SMARCD2Q92925 531 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 P2RY11Q96G91 374 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 CATSPER2Q96P56 530 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 MRPS26Q9BYN8 205 aaKnown RBP4.23□□□□□ -1.73
VCAN-209ENST00000513016 LDAHQ9H6V9 325 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 NMUR1Q9HB89 426 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 FBXW11Q9UKB1 542 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 SCML2Q9UQR0 700 aa4.23□□□□□ -1.73
VCAN-209ENST00000513016 KLHL33A6NCF5 533 aa4.22□□□□□ -1.73
VCAN-209ENST00000513016 LIASO43766 372 aa4.22□□□□□ -1.73
VCAN-209ENST00000513016 SH3BGRLO75368 114 aa4.22□□□□□ -1.73
VCAN-209ENST00000513016 HBQ1P09105 142 aa4.22□□□□□ -1.73
VCAN-209ENST00000513016 HNF1BP35680 557 aa4.22□□□□□ -1.73
VCAN-209ENST00000513016 NAE1Q13564 534 aa4.22□□□□□ -1.73
VCAN-209ENST00000513016 FGL2Q14314 439 aa4.22□□□□□ -1.73
VCAN-209ENST00000513016 SQLEQ14534 574 aa4.22□□□□□ -1.73
VCAN-209ENST00000513016 SNX20Q7Z614 316 aa4.22□□□□□ -1.73
VCAN-209ENST00000513016 ZNF605Q86T29 641 aa4.22□□□□□ -1.73
VCAN-209ENST00000513016 DHFR2Q86XF0 187 aa4.22□□□□□ -1.73
VCAN-209ENST00000513016 GALNT4Q8N4A0 578 aa4.22□□□□□ -1.73
VCAN-209ENST00000513016 TMEM145Q8NBT3 493 aa4.22□□□□□ -1.73
VCAN-209ENST00000513016 ITFG1Q8TB96 612 aa4.22□□□□□ -1.73
VCAN-209ENST00000513016 PNPLA2Q96AD5 504 aa4.22□□□□□ -1.73
VCAN-209ENST00000513016 GSTK1Q9Y2Q3 226 aa4.22□□□□□ -1.73
VCAN-209ENST00000513016 NCANO14594 1321 aa4.22□□□□□ -1.73
VCAN-209ENST00000513016 MYBPHLA2RUH7 354 aa4.22□□□□□ -1.73
VCAN-209ENST00000513016 PHGDHO43175 533 aaKnown RBP4.22□□□□□ -1.73
VCAN-209ENST00000513016 OR1F1O43749 312 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms