RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 SPPL2CQ8IUH8 684 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 SLC47A1Q96FL8 570 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 OR52E6Q96RD3 313 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 DCUN1D5Q9BTE7 237 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 RNF208Q9H0X6 261 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 THG1LQ9NWX6 298 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 ARL5AQ9Y689 179 aa10.72□□□□□ -0.69
LIMCH1-205ENST00000503057 GPIP06744 558 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 ADH1AP07327 375 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 SFSWAPQ12872 951 aaKnown RBP10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 KRR1Q13601 381 aaKnown RBP10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 SLC5A9Q2M3M2 681 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 ARMC3Q5W041 872 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 PAOXQ6QHF9 649 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 GPR180Q86V85 440 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 STX19Q8N4C7 294 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 ZNF395Q9H8N7 513 aaPredicted RBP10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 SNX8Q9Y5X2 465 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 LTBP4Q8N2S1 1624 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 SYNDIG1LA6NDD5 238 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 WDR47O94967 919 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 EDN1P05305 212 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 PPP2R1BP30154 601 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 RPL3P39023 403 aaKnown RBP10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 AQP4P55087 323 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 TGM3Q08188 693 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 ZC3H12BQ5HYM0 836 aaKnown RBP10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 SIRPB2Q5JXA9 342 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 UBAP2Q5T6F2 1119 aaKnown RBP10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 ARHGAP22Q7Z5H3 698 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 SLC44A2Q8IWA5 706 aaPredicted RBP10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 SPATA17Q96L03 361 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 CORO1BQ9BR76 489 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 AK5Q9Y6K8 562 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 SLX4Q8IY92 1834 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 GRM6O15303 877 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 MAP3K13O43283 966 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 FGF19O95750 216 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 LAG3P18627 525 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 SLC26A3P40879 764 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 SCAPQ12770 1279 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 RFX4Q33E94 735 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 FNDC3BQ53EP0 1204 aaKnown RBP10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 INTS11Q5TA45 600 aaKnown RBP10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 RNF220Q5VTB9 566 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 SFRP1Q8N474 314 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 SMG8Q8ND04 991 aaKnown RBP10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 BRD9Q9H8M2 597 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 RHBDL2Q9NX52 303 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 USE1Q9NZ43 259 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 TIMM22Q9Y584 194 aa10.71□□□□□ -0.69
LIMCH1-205ENST00000503057 A0A1W2PQ67 120 aa10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 A8MT66 165 aa10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 KPNA3O00505 521 aaPredicted RBP10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 CA12O43570 354 aa10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 IQCF3P0C7M6 154 aa10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 GNPDA1P46926 289 aa10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 MLLT6P55198 1093 aaPredicted RBP10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 LIN52Q52LA3 116 aa10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 FAM182AQ5T1J6 154 aa10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 UBE2R2Q712K3 238 aaPredicted RBP10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 OR2T12Q8NG77 320 aa10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 B4GALNT2Q8NHY0 566 aa10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 OR52B2Q96RD2 323 aa10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 CCDC106Q9BWC9 280 aa10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 EBF3Q9H4W6 596 aa10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 DUSP12Q9UNI6 340 aa10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 PSAT1Q9Y617 370 aa10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 FAM220BPB1ANY3 271 aa10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 DLX3O60479 287 aa10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 PCSK2P16519 638 aa10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 GABRR2P28476 465 aa10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 NIPAL4Q0D2K0 466 aa10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 SLC10A7Q0GE19 358 aa10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 GTF2H2Q13888 395 aa10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 AP5B1Q2VPB7 878 aa10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 INO80DQ53TQ3 878 aaPredicted RBP10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 XKR6Q5GH73 641 aa10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 GTF2H2CQ6P1K8 395 aa10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 C2CD4AQ8NCU7 369 aaPredicted RBP10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 ALG2Q9H553 416 aa10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 HPS4Q9NQG7 708 aa10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 TMEM248Q9NWD8 314 aa10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 ZNF490Q9ULM2 529 aaPredicted RBP10.71□□□□□ -0.7
LIMCH1-205ENST00000503057 FKTNO75072 461 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 HOXA11P31270 313 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 MAPK9P45984 424 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 UPP1Q16831 310 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 C6orf52Q5T4I8 152 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 FBXL22Q6P050 247 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 FBXL19Q6PCT2 694 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 WDR60Q8WVS4 1066 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 CENPIQ92674 756 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 TIFAQ96CG3 184 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 PRRG3Q9BZD7 231 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 HIPK3Q9H422 1215 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 CFAP97Q9P2B7 532 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 ZDHHC2Q9UIJ5 367 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 CCDC162PA2VCL2 907 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms